Resources


Challenge Credentialed Access

Discharge Me: BioNLP ACL'24 Shared Task on Streamlining Discharge Documentation

Justin Xu

Data for the "Discharge Me!" Shared Task on Streamlining Discharge Documentation for BioNLP ACL'24

generation bionlp acl discharge summary

Published: April 12, 2024. Version: 1.3

Database Open Access

Patient-level dataset to study the effect of COVID-19 in people with Multiple Sclerosis

Hamza Khan, Lotte Geys, peer baneke, Giancarlo Comi, Liesbet Peeters

This dataset is part of the Global Data Sharing Initiative. The data was acquired by people with MS and clinicians using a fast data entry tool. The dataset includes demographics, comorbidities and hospital stay and COVID-19 symptoms of PwMS.

Published: Jan. 2, 2024. Version: 1.0.1

Challenge Credentialed Access

BioNLP Workshop 2023 Shared Task 1A: Problem List Summarization

Yanjun Gao, Dmitriy Dligach, Timothy Miller, Majid Afshar

This is the data storage for BioNLP Workshop Shared Task 1A: Problem List Summarization.

bionlp clinical natural language processing electronic health record summarization

Published: Nov. 12, 2023. Version: 2.0.0

Software Open Access

Transformer-DeID: Deidentification of free-text clinical notes with transformers

Callandra Moore, Lucas Bulgarelli, Tom Pollard, Alistair Johnson

Fine tune transformer-based neural networks to deidentify clinical text data.

deidentification neural networks transformers

Published: Nov. 2, 2023. Version: 1.0.0

Software Open Access

Lightweight 12-lead ECG viewer for MATLAB

Erick Andres Perez Alday, Larisa Tereshchenko

Clinical Viewer of raw digital 12-lead ECG file (ECG file in .txt format).

clinical 12-lead ecg routine clinical ecg viewer electrocardiogram

Published: Aug. 30, 2021. Version: 1.0.0

Database Credentialed Access

National Institutes of Health Stroke Scale (NIHSS) Annotations for the MIMIC-III Database

Jiayang Wang, Xiaoshuo Huang, Lin Yang, Jiao Li

A dataset of annotated NIHSS scale items and corresponding scores from stroke patients discharge summaries in MIMIC-III.

Published: Jan. 25, 2021. Version: 1.0.0

Database Open Access

NInFEA: Non-Invasive Multimodal Foetal ECG-Doppler Dataset for Antenatal Cardiology Research

Danilo Pani, Eleonora Sulas, Monica Urru, Reza Sameni, Luigi Raffo, Roberto Tumbarello

Open dataset featuring non-invasive electrophysiological recordings, fetal pulsed-wave Doppler and maternal respiration signals. It provides a ground truth on the fetal heart activity when an invasive scalp lead is unavailable.

foetus pwd doppler foetal ecg maternal ecg pwd envelope non-invasive cardiology early pregnancy antenatal fecg ecg

Published: Nov. 12, 2020. Version: 1.0.0

Visualize waveforms

Database Restricted Access

Smartphone-Captured Chest X-Ray Photographs

Po-Chih Kuo, ChengChe Tsai, Diego M Lopez, Alexandros Karargyris, Tom Pollard, Alistair Johnson, Leo Anthony Celi

Smartphone-captured CXR images including photographs taken from MIMIC-CXR and CheXpert, photographs taken by resident doctors, and photographs taken with different devices.

smartphone photograph cxr

Published: Sept. 27, 2020. Version: 1.0.0

Software Open Access

R-DECO: An open-source Matlab based graphical user interface for the detection and correction of R-peaks

Jonathan Moeyersons, Matthew Amoni, Sabine Van Huffel, Rik Willems, Carolina Varon

An open-source Matlab based graphical user interface for the detection and correction of R-peaks.

algorithms and analysis of algorithms signal processiong visual analysis graphical user interface

Published: Sept. 8, 2020. Version: 1.0.0

Database Open Access

Siena Scalp EEG Database

Paolo Detti

The database consists of EEG recordings of 14 epileptic patients acquired at the Unit of Neurology and Neurophysiology of the University of Siena. Subjects include 9 males (ages 25-71) and 5 females (ages 20-58).

Published: Aug. 11, 2020. Version: 1.0.0

Visualize waveforms