Resources
36 results for "ehr"
Database
Credentialed Access
MIMIC-IV-Ext-CLIF: MIMIC-IV in the Common Longitudinal ICU data Format (CLIF)
MIMIC-IV-Ext-CLIF is a derived dataset of MIMIC-IV v3.1, transformed into the Common Longitudinal ICU data Format (CLIF). CLIF is an open-source critical care data model developed by a consortium of more than 10 US academic medical centers to standa…
Model
Credentialed Access
Fine-tuning foundational models to code diagnoses from veterinary health records
Veterinary medical records represent a large data resource for application to veterinary and One Health clinical research efforts. Use of the data is limited by interoperability challenges including inconsistent data formats and data siloing. Clinic…
Database
Credentialed Access
ENCoDE, mEasuring skiN Color to correct pulse Oximetry DisparitiEs: skin tone and clinical data from a prospective trial on acute care patients.
The wide adoption of pulse oximeters has given clinicians an easy, non-invasive way to measure arterial oxygen saturation. However, evidence suggests that pulse oximeter measurements have a deeper discrepancy in patients of darker skin tones compare…
Database
Credentialed Access
EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries
Discharge summaries in Electronic Health Records (EHRs) are crucial for clinical decision-making, but their length and complexity make information extraction challenging, especially when dealing with accumulated summaries across multiple patient adm…
Database
Credentialed Access
ODD: A Benchmark Dataset for the NLP-based Opioid Related Aberrant Behavior Detection
Opioid related aberrant behaviors (ORAB) present novel risk factors for opioid overdose. Previously, ORAB have been mainly assessed by survey results and by monitoring drug administrations. Such methods however, cannot scale up and do not cover the …
Database
Credentialed Access
Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries
Opioid use disorder (OUD) is underdiagnosed in health system settings, limiting research on OUD using electronic health records (EHRs). Medical encounter notes can enrich structured EHR data with documented signs and symptoms of OUD and social risks…
Database
Credentialed Access
Tasks 1 and 3 from Progress Note Understanding Suite of Tasks: SOAP Note Tagging and Problem List Summarization
Applying methods in natural language processing on electronic health records (EHR) data is a growing field. Existing corpus and annotation focus on modelling textual features and relation prediction [1] . However, there is a paucity of annotated cor…
Database
Credentialed Access
Learning to Ask Like a Physician: a Discharge Summary Clinical Questions (DiSCQ) Dataset
Existing question answering (QA) datasets derived from electronic health records (EHR) are artificially generated and consequently fail to capture realistic physician information needs. We present Discharge Summary Clinical Questions (DiSCQ), a newl…
Database
Credentialed Access
MIMIC-III and eICU-CRD: Feature Representation by FIDDLE Preprocessing
This is a preprocessed dataset derived from patient records in MIMIC-III and eICU, two large-scale electronic health record (EHR) databases. It contains features and labels for 5 prediction tasks involving 3 adverse outcomes (prediction times listed…
Database
Credentialed Access
National Institutes of Health Stroke Scale (NIHSS) Annotations for the MIMIC-III Database
The National Institutes of Health Stroke Scale (NIHSS) is a 15-item neurologic examination stroke scale. It quantifies the physical manifestations of neurological deficits and provides crucial support for clinical decision making and early-stage eme…