Resources


Database Credentialed Access

MS-CXR: Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing

Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, et al.

MS-CXR is a new dataset containing 1162 chest X-ray bounding box labels paired with radiology text descriptions, annotated and verified by two board-certified radiologists.

vision-language processing chest x-ray phrase grounding localization

Published: Nov. 15, 2024. Version: 1.1.0

Database Contributor Review

COVID Data for Shared Learning (CDSL): A comprehensive, multimodal COVID-19 dataset from HM Hospitales

Álvaro Ritoré, Andreea M Oprescu, Alberto Estirado Bronchalo, et al.

COVID Data for Shared Learning (CDSL) is a multimodal database comprising de-identified structured health data and radiological images from 4,479 patients with COVID-19, as a comprehensive toolkit for developing predictive models.

covid-19 multimodal database radiological images open data healthcare data machine learning and ai

Published: Oct. 25, 2024. Version: 1.0.0

Database Credentialed Access

MedDec: Medical Decisions for Discharge Summaries in the MIMIC-III Database

Mohamed Elgaar, Jiali Cheng, Nidhi Vakil, et al.

Annotations of ten types of medical decisions from discharge summaries in the MIMIC-III database.

natural language processing medical decisions span classification discharge summary mimic

Published: Oct. 16, 2024. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Ext-MDS-ED: Multimodal Decision Support in the Emergency Department - a Benchmark Dataset for Diagnoses and Deterioration Prediction in Emergency Medicine

Juan Miguel Lopez Alcaraz, Nils Strodthoff

MIMIC-IV-ext-MDS-ED proposes a dataset to benchmark multimodal decision support in the emergency department. It features multimodal input (including ECG waveforms) and a comprehensive set of prediction targets (diagnoses and deterioration prediction)

emergency department ecg diagnoses prediction deterioration prediction benchmark multimodal

Published: Sept. 12, 2024. Version: 1.0.0

Database Open Access

ScientISST MOVE: Annotated Wearable Multimodal Biosignals recorded during Everyday Life Activities in Naturalistic Environments

João Areias Saraiva, Mariana Abreu, Ana Sofia Carmo, et al.

Multimodal (ECG, EMG, EDA, PPG, TEMP, ACC) biosignal dataset of everyday activities. Created with 3 wearable devices based on ScientISST Sense and Empatica E4.

greet lift uncontrolled environments run jump gesticulate walk wearable multimodal

Published: March 25, 2024. Version: 1.0.1

Database Credentialed Access

MIMIC-CXR-JPG - chest radiographs with structured labels

Alistair Johnson, Matthew Lungren, Yifan Peng, et al.

Chest x-rays in JPG format with structured labels derived from the associated radiology report.

computer vision chest x-ray radiology mimic deep learning

Published: March 12, 2024. Version: 2.1.0

Database Credentialed Access

EchoNotes Structured Database derived from MIMIC-III (ECHO-NOTE2NUM)

Gloria Hyunjung Kwak, Dana Moukheiber, Mira Moukheiber, et al.

A structured echocardiogram database derived from 43,472 observational notes obtained during echocardiogram studies conducted in the intensive care unit at the Beth Israel Deaconess Medical Center between 2001 and 2012.

Published: Feb. 23, 2024. Version: 1.0.0

Database Credentialed Access

CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports

Vlada Rozova, Anna Khanina, Jasmine Teng, et al.

A corpus of cytology and histopathology reports annotated for terminology relevant to fungal infections. Ideal for validation of named entity recognition and relation extraction methods.

nlp clinical documentation information extraction invasive fungal infections

Published: Feb. 20, 2024. Version: 1.0.2

Database Credentialed Access

EHR-DS-QA: A Synthetic QA Dataset Derived from Medical Discharge Summaries for Enhanced Medical Information Retrieval Systems

Konstantin Kotschenreuther

Dataset consisting of question and answer pairs synthetically generated from medical discharge summaries, designed to facilitate the training and development of large language models specifically tailored for healthcare applications

mimic-iv clinical question-answering medical discharge summaries large language models

Published: Jan. 11, 2024. Version: 1.0.0

Challenge Open Access

Heart Murmur Detection from Phonocardiogram Recordings: The George B. Moody PhysioNet Challenge 2022

Matthew Reyna, Yashar Kiarashi, Andoni Elola, et al.

2022 Physionet Challenge is devoted to detecting the presence or absence of murmurs from multiple heart sound recordings from multiple auscultation locations, as well as detecting the clinical outcomes.

challenge competition cardiac auscultation congenital heart diseases

Published: Sept. 28, 2023. Version: 1.0.0