Resources


Database Credentialed Access

Multimodal Clinical Monitoring in the Emergency Department (MC-MED)

Aman Kansal, Emma Chen, Tom Jin, et al.

A multimodal dataset of deidentified clinical and physiological data from emergency department visits, supporting research on patient outcomes, care processes, and the effects of continuous monitoring during and after the COVID-19 pandemic.

Published: Sept. 25, 2025. Version: 1.0.1

Database Credentialed Access

CXR-Align: A Benchmark for CXR-Report Alignment with Negations

Hanbin Ko

CXR-Align is a benchmark dataset created to evaluate vision-language models' capability to interpret negations in chest X-ray (CXR) reports, featuring systematically modified reports from MIMIC-CXR.

Published: Aug. 21, 2025. Version: 1.0.0

Database Credentialed Access

AIPatient KG: MIMIC-III and CORAL Electronic Health Records based Patient Knowledge Graph

Lizhou Fan, Huizi Yu

This project integrates MIMIC-III and CORAL electronic health records into knowledge graphs to improve medical analysis and enhance decision-making capabilities. Resources include two knowledge graph snapshots and two question-and-answering datasets.

Published: April 15, 2025. Version: 1.0.0

Database Credentialed Access

EHRXQA: A Multi-Modal Question Answering Dataset for Electronic Health Records with Chest X-ray Images

Seongsu Bae, Daeun Kyung, Jaehee Ryu, et al.

We present EHRXQA, the first multi-modal EHR QA dataset combining structured patient records with aligned chest X-ray images. EHRXQA contains a comprehensive set of QA pairs covering image-related, table-related, and image+table-related questions.

question answering evaluation chest x-ray multi-modal question answering ehr question answering semantic parsing benchmark visual question answering deep learning machine learning electronic health records

Published: July 23, 2024. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-ED

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, et al.

A large database of emergency department admissions.

emergency department ed emergency mimic-iv electronic health record mimic

Published: Jan. 5, 2023. Version: 2.2

Database Credentialed Access

RuMedNLI: A Russian Natural Language Inference Dataset For The Clinical Domain

Pavel Blinov, Aleksandr Nesterov, Galina Zubkova, et al.

RuMedNLI is the full counterpart dataset of MedNLI in Russian language.

natural language inference recognizing textual entailment russian language

Published: April 1, 2022. Version: 1.0.0

Database Credentialed Access

National Institutes of Health Stroke Scale (NIHSS) Annotations for the MIMIC-III Database

Jiayang Wang, Xiaoshuo Huang, Lin Yang, et al.

A dataset of annotated NIHSS scale items and corresponding scores from stroke patients discharge summaries in MIMIC-III.

Published: Jan. 25, 2021. Version: 1.0.0

Database Credentialed Access

MIMIC-III Clinical Database

Alistair Johnson, Tom Pollard, Roger Mark

MIMIC-III is a large, freely-available database comprising deidentified health-related data associated with over forty thousand patients who stayed in critical care units of the Beth Israel Deaconess Medical Center between 2001 and 2012. The databas…

clinical critical care natural language processing intensive care machine learning

Published: Sept. 4, 2016. Version: 1.4

Database Credentialed Access

MIMIC-III-Ext-VeriFact-BHC: Labeled Propositions From Brief Hospital Course Summaries for Long-form Clinical Text Evaluation

Philip Chung, Akshay Swaminathan, Alex Goodell, et al.

A clinician-labeled dataset for fact-checking long-form clinical text against patient EHRs. The dataset contains LLM-written and human-written Brief Hospital Course summaries decomposed to atomic claim and sentence propositions with annotations.

natural language processing clinical informatics formal logic chart review clinical notes text embedding electronic health records artificial intelligence brief hospital course long-form text llm evaluation logical atomism retrieval-augmented generation text reranking clinical medicine atomic claim fact verification hybrid retrieval llm-as-a-judge large language models

Published: Aug. 27, 2026. Version: 1.1.0

Database Contributor Review

BIDMC Metabolomic Cohort of Adults with Biopsy-Proven MASLD

Valeria Gutierrez de Piñeres, Claudia S Tamayo-Torres, Christos Mantzoros

De-identified serum metabolomics from an Australian cohort of adults with and without biopsy-proven MASLD. Includes 1,618 targeted metabolomic features quantified by UPLC-MS/MS (Metabolon Inc.).

Published: Aug. 9, 2026. Version: 1.0.0