Resources


Database Restricted Access

Multimodal Physiological Monitoring During Virtual Reality Piloting Tasks

Hrishikesh Rao, Emilie Cowen, Sophia Yuditskaya, Laura Brattain, Jamie Koerner, Gregory Ciccarelli, Ronisha Carter, Vivienne Sze, Tamara Broderick, Hayley Reynolds, Kyle McAlpin, Thomas Heldt

Physiologic and flight performance data from a virtual reality task. Data for the CogPilot Data Challenge.

Published: Aug. 25, 2022. Version: 1.0.0

Software Credentialed Access

Code for generating the HAIM multimodal dataset of MIMIC-IV clinical data and x-rays

Luis R Soenksen, Yu Ma, Cynthia Zeng, Leonard David Jean Boussioux, Kimberly Villalobos Carballo, Liangyuan Na, Holly Wiberg, Michael Li, Ignacio Fuentes, Dimitris Bertsimas

Code for generating the HAIM multimodal dataset of MIMIC-IV clinical data and x-rays

database code multimodality

Published: Aug. 23, 2022. Version: 1.0.1

Database Credentialed Access

Chest X-ray segmentation images based on MIMIC-CXR

Li-Ching Chen, Po-Chih Kuo, Ryan Wang, Judy Gichoya, Leo Anthony Celi

A chest x-rays segmentation dataset derived from MIMIC-CXR based on deep learning algorithm and human examination.

segmentation chest x-rays cxr

Published: Aug. 18, 2022. Version: 1.0.0

Challenge Open Access

Classification of 12-lead ECGs: The PhysioNet/Computing in Cardiology Challenge 2020

Erick Andres Perez Alday, Annie Gu, Amit Shah, Chengyu Liu, Ashish Sharma, Salman Seyedi, Ali Bahrami Rad, Matthew Reyna, Gari Clifford

The goal of the 2020 PhysioNet - Computing in Cardiology Challenge is to design and implement a working, open-source algorithm that can automatically identify cardiac abnormalities in 12-lead ECG recordings.

Published: July 29, 2022. Version: 1.0.2

Visualize waveforms

Database Credentialed Access

NCH Sleep DataBank: A Large Collection of Real-world Pediatric Sleep Studies with Longitudinal Clinical Data

Harlin Lee, Boyue Li, Yungui Huang, Yuejie Chi, Simon Lin

The NCH Sleep DataBank includes 3,984 pediatric sleep studies on 3,673 unique patients conducted at Nationwide Children's Hospital between 2017 and 2019. It contains polysomnography (PSG), clinical annotations, and longitudinal clinical data.

eeg ehr pediatrics clinical decision support polysomnography sleep study ecg electronic health records sleep disorders

Published: Oct. 27, 2021. Version: 3.1.0

Database Credentialed Access

Maternal fat ultrasound measurement and nutritional assessment during pregnancy: A dataset centered in gestational outcomes

Alexandre da Silva Rocha, Juliana Rombaldi Bernardi, Alice Schoffel, Daniela Kretzer, Salete Matos, José Antônio Magalhães, Marcelo Goldani

Dataset collected as part of a prospective study in which abdominal maternal fat tissue measurements were compared with outcomes during hospitalization for labor and delivery.

pregnancy ultrasound abdominal

Published: Dec. 4, 2020. Version: 1.0.0

Database Credentialed Access

AMR-UTI: Antimicrobial Resistance in Urinary Tract Infections

Michael Oberst, Soorajnath Boominathan, Helen Zhou, Sanjat Kanjilal, David Sontag

AMR-UTI is a freely accessible dataset, derived from electronic health record (EHR) information on over 100,000 urinary tract infections (UTI) treated at Massachusetts General Hospital and Brigham & Women's Hospital in Boston, MA, USA.

antibiotic resistance causal inference policy learning antimicrobial resistance urinary tract infection clinical decision support machine learning

Published: Nov. 4, 2020. Version: 1.0.0

Database Restricted Access

Gout Emergency Department Chief Complaint Corpora

John David Osborne, Tobias O'Leary, Amy Mudano, James Booth, Giovanna Rosas, Gurusai Sujitha Peramsetty, Anthony Knighton, Jeff Foster, Ken Saag, Maria Ioana Danila

A corpus of chief complaints tagged with predicted gout flare status and chart reviewed gout flare status. Ideal for input to masked language model training to supplement lengthy clinical text notes.

gout nlp emergency department

Published: Oct. 19, 2020. Version: 1.0

Database Credentialed Access

MIMIC-III - SequenceExamples for TensorFlow modeling

Jonas Kemp, Kun Zhang, Andrew Dai

MIMIC-III data converted into TensorFlow SequenceExample format, for use in modeling pipelines.

tensorflow sequence modeling deep learning machine learning

Published: Sept. 29, 2020. Version: 1.0.0

Software Open Access

R-DECO: An open-source Matlab based graphical user interface for the detection and correction of R-peaks

Jonathan Moeyersons, Matthew Amoni, Sabine Van Huffel, Rik Willems, Carolina Varon

An open-source Matlab based graphical user interface for the detection and correction of R-peaks.

algorithms and analysis of algorithms signal processiong visual analysis graphical user interface

Published: Sept. 8, 2020. Version: 1.0.0