Resources


Model Credentialed Access

Clinical BERT Models Trained on Pseudo Re-identified MIMIC-III Notes

Eric Lehman, Sarthak Jain, Karl Pichotta, Yoav Goldberg, Byron Wallace

We explore recovering sensitive info from BERT trained over non-deidentified EHR. We make our models and data available to further facilitate research.

Published: April 28, 2021. Version: 1.0.0

Challenge Open Access

Early Prediction of Sepsis from Clinical Data: The PhysioNet/Computing in Cardiology Challenge 2019

Matthew Reyna, Chris Josef, Russell Jeter, Supreeth Shashikumar, Benjamin Moody, M. Brandon Westover, Ashish Sharma, Shamim Nemati, Gari D. Clifford

The 2019 PhysioNet Computing in Cardiology Challenge invites participants to predict sepsis in clinical data

prediction challenge sepsis

Published: Aug. 5, 2019. Version: 1.0.0

Database Credentialed Access

TherLid: A Thermometry Linked Dataset

Jeremy Tan, Inês Martins, João Matos, Tiago Filipe Sousa Gonçalves, Tetsu Ohnuma, Jaime dos Santos Cardoso, Leo Anthony Celi, Vijay Krishnamoorthy, Andrea Lane, An Kwok Wong

TherLiD is an open-source dataset of 13,251 paired temperature readings (contact and infrared) from MIMIC-IV and eICU databases. With added demographics and derived data, it supports research on racial and ethnic disparities in infrared thermometry.

thermometry intensive care unit health equity electronic health records

Published: Jan. 21, 2025. Version: 1.0.0

Challenge Credentialed Access

BioNLP Workshop 2023 Shared Task 1A: Problem List Summarization

Yanjun Gao, Dmitriy Dligach, Timothy Miller, Majid Afshar

This is the data storage for BioNLP Workshop Shared Task 1A: Problem List Summarization.

bionlp clinical natural language processing electronic health record summarization

Published: Nov. 12, 2023. Version: 2.0.0

Database Open Access

MIMIC-IV Clinical Database Demo

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark

An openly available subset of patients in the MIMIC-IV database.

critical care electronic health record mimic

Published: Jan. 31, 2023. Version: 2.2

Database Credentialed Access

MIMIC-IV-ED

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Leo Anthony Celi, Roger Mark, Steven Horng

A large database of emergency department admissions.

emergency department ed emergency mimic-iv electronic health record mimic

Published: Jan. 5, 2023. Version: 2.2

Database Restricted Access

Hospitalized patients with heart failure: integrating electronic healthcare records and external outcome data

Zhongheng Zhang, Linghong Cao, Yan Zhao, Ziyin Xu, Rangui Chen, Lukai Lv, Ping Xu

The new version added beta blockers in the dat_md.csv file. Dataset comprising hospital-level data on patients who were admitted with heart failure to Zigong Fourth People’s Hospital, Sichuan, China between 2016 and 2019.

china heart failure electronic health record

Published: May 22, 2022. Version: 1.3

Database Credentialed Access

MIMIC-III and eICU-CRD: Feature Representation by FIDDLE Preprocessing

Shengpu Tang, Parmida Davarmanesh, Yanmeng Song, Danai Koutra, Michael Sjoding, Jenna Wiens

Features and labels from MIMIC-III and eICU-CRD produced by FIDDLE, an EHR preprocessing pipeline.

preprocessing electronic health record machine learning

Published: April 28, 2021. Version: 1.0.0

Database Open Access

MIMIC-III Clinical Database Demo

Alistair Johnson, Tom Pollard, Roger Mark

An open source demo of the MIMIC-III Clinical Database

critical care electronic health records mimic

Published: April 24, 2019. Version: 1.4

Database Credentialed Access

SCRIPT CarpeDiem Dataset: demographics, outcomes, and per-day clinical parameters for critically ill patients with suspected pneumonia

Nikolay Markov, Catherine A Gao, Thomas Stoeger, Mengjia Kang, Anna Pawlowski, Prasanth Nannapaneni, Luke Rasmussen, Rogan Grant, Daniel Schneider, Justin Starren, Theresa Walunas, Richard Wunderink, GR Scott Budinger, Alexander Misharin, Benjamin Singer, NU SCRIPT Study Investigators

SCRIPT seeks to delineate the host/pathogen interactions during pneumonia using multiomic analysis of bronchoalveolar lavage fluid joined with clinical data and physician adjudication.

Published: Aug. 4, 2025. Version: 1.8.0