Resources

This study presents MIMIC-III-Ext-SBDH, a manually reviewed and consolidated annotation dataset of social and behavioral determinants of health (SBDH) derived from clinical notes in the MIMIC-III database. We previously developed SBDH-Reader, a larg…

The MIMIC-IV-Echo module contains structured echocardiographic measurements and DICOM files from echocardiography exams. Structured measurements are available from 206,488 echocardiogram studies (including 179,928 transthoracic, 16,389 stress, and 1…

Surveillance of invasive fungal infection (IFI) in clinical settings is a laborious process requiring a detailed review of patient medical history. One of the key sources of clinical information is imaging reports: radiologist-produced free-text rep…

Measurable progress in the development of medical decision support systems has been hindered by a lack of comprehensive datasets. Many available datasets focus on narrow prediction tasks and do not include a diverse range of data types, which limits…

Surveillance of invasive fungal infection (IFI) in clinical settings is a laborious process requiring a detailed review of patient medical history. One of the key sources of clinical information is cytology and histopathology reports: pathologist-pr…

Recent progress in Large Vision-Language Models (LVLMs) has enabled promising applications in medical tasks such as report generation and visual question answering. However, existing benchmarks focus mainly on the final diagnostic answer, offering l…

CXR-Align is a benchmark dataset designed to evaluate vision-language processing (VLP) models' ability to accurately interpret negations in chest X-ray (CXR) reports. Negations are prevalent in medical documentation and pose significant challenges f…

Medical Visual Question Answering (VQA) is an important task in medical multi-modal Large Language Models (LLMs), aiming to answer clinically relevant questions regarding input medical images. This technique has the potential to improve the efficien…

The number of publicly available ECG datasets has increased tremendously in the past few years and several of these datasets have developed into widely used benchmarking datasets. However, most of them exhibit a common limitation, namely the relianc…

Both medical care and observational studies in oncology require a thorough understanding of a patient's disease progression and treatment history, often elaborately documented within clinical notes. As large language models (LLMs) are becoming more …