Resources


Database Open Access

VitalDB, a high-fidelity multi-parameter vital signs database in surgical patients

Hyung-Chul Lee, Chul-Woo Jung

VitalDB, a high-fidelity multi-parameter vital signs database in surgical patients

waveform anesthesia vitaldb intraoperative biosignal ecg

Published: Sept. 21, 2022. Version: 1.0.0

Database Contributor Review

Salzburg Intensive Care database (SICdb), a freely accessible intensive care database

Niklas Rodemund, Andreas Kokoefer, Bernhard Wernly, Crispiana Cozowicz

The SICdb dataset, version 1.0.5 contains 27386 admissions to an ICU in an Austrian tertiary care institution.

clinical intensive care machine learning critical care

Published: Feb. 14, 2023. Version: 1.0.5

Database Credentialed Access

MIMIC-IV

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark

Database of patients admitted to the Beth Israel Deaconess Medical Center

mimic machine learning critical care intensive care unit

Published: Jan. 6, 2023. Version: 2.2

Database Restricted Access

REFLACX: Reports and eye-tracking data for localization of abnormalities in chest x-rays

Ricardo Bigolin Lanfredi, Mingyuan Zhang, William Auffermann, Jessica Chan, Phuong-Anh Duong, Vivek Srikumar, Trafton Drew, Joyce Schroeder, Tolga Tasdizen

This dataset contains 3032 cases of eye-tracking data collected while five radiologists dictated reports for frontal chest x-rays, synchronized timestamped dictation transcription, and manual labels for validation of localization of abnormalities.

computer vision eye tracking radiology report machine learning chest x-rays radiology reflacx fixations gaze deep learning

Published: Sept. 27, 2021. Version: 1.0.0

Database Credentialed Access

AMR-UTI: Antimicrobial Resistance in Urinary Tract Infections

Michael Oberst, Soorajnath Boominathan, Helen Zhou, Sanjat Kanjilal, David Sontag

AMR-UTI is a freely accessible dataset, derived from electronic health record (EHR) information on over 100,000 urinary tract infections (UTI) treated at Massachusetts General Hospital and Brigham & Women's Hospital in Boston, MA, USA.

antibiotic resistance causal inference policy learning antimicrobial resistance urinary tract infection clinical decision support machine learning

Published: Nov. 4, 2020. Version: 1.0.0

Database Open Access

Surface electromyographic signals collected during long-lasting ground walking of young able-bodied subjects

Francesco Di Nardo, Christian Morbidoni, Sandro Fioretti

The dataset is composed of long-lasting surface electromyographic (sEMG) signals recorded from ten muscles during ground walking of 31 young able-bodied subjects in Movement Analysis Lab, Università Politecnica delle Marche, Ancona, Italy.

surface emg signal walking biomedical signals gait analysis muscle recruitment

Published: March 31, 2022. Version: 1.0.0

Visualize waveforms

Database Credentialed Access

RadGraph: Extracting Clinical Entities and Relations from Radiology Reports

Saahil Jain, Ashwin Agrawal, Adriel Saporta, Steven QH Truong, Du Nguyen Duong, Tan Bui, Pierre Chambon, Matthew Lungren, Andrew Ng, Curtis Langlotz, Pranav Rajpurkar

RadGraph is a dataset of entities and relations in full-text chest X-ray radiology reports, which are obtained using a novel information extraction (IE) schema to capture clinically relevant information in a radiology report.

entity and relation extraction graph multi-modal radiology natural language processing

Published: June 3, 2021. Version: 1.0.0

Database Open Access

Apnea-ECG Database

Seventy ECG signals with expert-labelled apnea annotations and machine-generated QRS annotations.

apnea sleep challenge multiparameter ecg

Published: Feb. 10, 2000. Version: 1.0.0

Visualize waveforms

Database Credentialed Access

MIMIC-III and eICU-CRD: Feature Representation by FIDDLE Preprocessing

Shengpu Tang, Parmida Davarmanesh, Yanmeng Song, Danai Koutra, Michael Sjoding, Jenna Wiens

Features and labels from MIMIC-III and eICU-CRD produced by FIDDLE, an EHR preprocessing pipeline.

preprocessing machine learning electronic health record

Published: April 28, 2021. Version: 1.0.0

Database Credentialed Access

Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries

Melissa Poulsen, Vanessa Troiani, Philip Freda, Danielle Mowery, Anahita Davoudi

The database contains a corpus of annotated data from the MIMIC-III Critical Care Database from a study that aimed to develop and apply an annotation schema to characterize opioid use disorder and related contextual factors.

clinical notes substance use natural language processing opioid use disorder

Published: Feb. 8, 2023. Version: 1.0.0