Resources
69 results for "clinical annotation"
Database
Credentialed Access
MIMIC-III-Ext-Notes
Unstructured clinical documentation, such as progress notes, contains rich contextual information critical for clinical decision-making but remains underutilized in computational research due to the limited availability of annotated datasets. The MI…
Database
Credentialed Access
RadCoref: Fine-tuning coreference resolution for different styles of clinical narratives
RadCoref is a small subset of MIMIC-CXR with manually annotated coreference mentions and clusters. The dataset is annotated by a panel of three cross-disciplinary experts with experience in clinical data processing following the i2b2 annotation sche…
Database
Credentialed Access
Radiology Report Expert Evaluation (ReXVal) Dataset
The Radiology Report Expert Evaluation (ReXVal) Dataset is a publicly available dataset of radiologist evaluations of errors in automatically generated radiology reports. The dataset contains annotations from 6 board certified radiologists on clinic…
Database
Credentialed Access
Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries
Opioid use disorder (OUD) is underdiagnosed in health system settings, limiting research on OUD using electronic health records (EHRs). Medical encounter notes can enrich structured EHR data with documented signs and symptoms of OUD and social risks…
Database
Credentialed Access
CLIP: A Dataset for Extracting Action Items for Physicians from Hospital Discharge Notes
We created a dataset of clinical action items annotated over MIMIC-III. This dataset, which we call CLIP, is annotated by physicians and covers 718 discharge summaries, representing 107,494 sentences. Annotations were collected as character-level sp…
Database
Credentialed Access
RadGraph-XL: A Large-Scale Expert-Annotated Dataset for Entity and Relation Extraction from Radiology Reports
Radiology reports are essential for clinical care but pose challenges for automated processing due to their unstructured nature. Existing datasets like RadGraph-1.0 focus narrowly on chest X-rays (CXR), limiting their applicability. We introduce Rad…
Database
Open Access
NInFEA: Non-Invasive Multimodal Foetal ECG-Doppler Dataset for Antenatal Cardiology Research
The development of algorithms for the extraction of the foetal ECG (fECG) from non-invasive recordings is hampered by the lack of publicly-available reference datasets, which could be used to benchmark different algorithms while providing a ground t…
Database
Credentialed Access
CORAL: expert-Curated medical Oncology Reports to Advance Language model inference
Both medical care and observational studies in oncology require a thorough understanding of a patient's disease progression and treatment history, often elaborately documented within clinical notes. As large language models (LLMs) are becoming more …
Database
Credentialed Access
MedVAL-Bench: Expert-Annotated Medical Text Validation Benchmark
MedVAL-Bench is a dataset containing physician evaluations of errors in language model (LM)-generated medical text. The dataset spans 6 diverse medical text generation tasks and includes annotations from 12 physicians on clinically significant error…
Database
Credentialed Access
MIMIC-IV-ECG-Ext-ICD: Diagnostic labels for MIMIC-IV-ECG
The number of publicly available ECG datasets has increased tremendously in the past few years and several of these datasets have developed into widely used benchmarking datasets. However, most of them exhibit a common limitation, namely the relianc…