Resources
73 results for "clinical annotation"
Database
Credentialed Access
MIMIC-CXR-Ext-ReRef: A Radiologist-Validated Dataset of MIMIC-CXR Report Pairs Following Different Reporting Practices
Radiologists follow heterogeneous reporting practices: two radiologists examining the same image and identifying the same clinical findings might nevertheless compose superficially distinct reports, varying in terminology, shorthand, formatting, and…
Database
Credentialed Access
MIMIC-III-Ext-Notes
Unstructured clinical documentation, such as progress notes, contains rich contextual information critical for clinical decision-making but remains underutilized in computational research due to the limited availability of annotated datasets. The MI…
Database
Credentialed Access
RadCoref: Fine-tuning coreference resolution for different styles of clinical narratives
RadCoref is a small subset of MIMIC-CXR with manually annotated coreference mentions and clusters. The dataset is annotated by a panel of three cross-disciplinary experts with experience in clinical data processing following the i2b2 annotation sche…
Database
Credentialed Access
MIMIC-IV-Ext-CPT - Procedure Code Labels for MIMIC Clinical Notes
MIMIC-IV-Ext-CPT is a credentialed-access dataset for predicting procedure and service code identifiers from deidentified MIMIC clinical notes. Version 1.0.1 contains 30,938 historically curated radiology training records, 7,705 annotated clinical t…
Database
Credentialed Access
Radiology Report Expert Evaluation (ReXVal) Dataset
The Radiology Report Expert Evaluation (ReXVal) Dataset is a publicly available dataset of radiologist evaluations of errors in automatically generated radiology reports. The dataset contains annotations from 6 board certified radiologists on clinic…
Database
Credentialed Access
Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries
Opioid use disorder (OUD) is underdiagnosed in health system settings, limiting research on OUD using electronic health records (EHRs). Medical encounter notes can enrich structured EHR data with documented signs and symptoms of OUD and social risks…
Database
Credentialed Access
CLIP: A Dataset for Extracting Action Items for Physicians from Hospital Discharge Notes
We created a dataset of clinical action items annotated over MIMIC-III. This dataset, which we call CLIP, is annotated by physicians and covers 718 discharge summaries, representing 107,494 sentences. Annotations were collected as character-level sp…
Database
Credentialed Access
RadGraph-XL: A Large-Scale Expert-Annotated Dataset for Entity and Relation Extraction from Radiology Reports
Radiology reports are essential for clinical care but pose challenges for automated processing due to their unstructured nature. Existing datasets like RadGraph-1.0 focus narrowly on chest X-rays (CXR), limiting their applicability. We introduce Rad…
Database
Open Access
NInFEA: Non-Invasive Multimodal Foetal ECG-Doppler Dataset for Antenatal Cardiology Research
The development of algorithms for the extraction of the foetal ECG (fECG) from non-invasive recordings is hampered by the lack of publicly-available reference datasets, which could be used to benchmark different algorithms while providing a ground t…
Database
Credentialed Access
ReEvalMed: Rethinking Medical Report Evaluation by Aligning Metrics with Real-World Clinical Judgment
Automatically generated radiology reports often receive high scores from existing evaluation metrics but fail to earn clinicians' trust. This gap reveals fundamental flaws in how current metrics assess the quality of generated reports. We rethink th…