Resources


Model Credentialed Access

Asclepius-R : Clinical Large Language Model Built On MIMIC-III Discharge Summaries

Sunjun Kweon, Junu Kim, Jiyoun Kim, et al.

Asclepius: Publicly Available Clinical Large Language Models with Synthetic Clinical Notes Asclepius-R: A instruction-finetuned large language model with MIMIC-III clinical notes

synthetic clinical notes synthetic notes asclepius open-source llm clinical llm large language model clinical notes

Published: March 25, 2024. Version: 1.1.0

Software Open Access

Software for computing Heart Rate Fragmentation

Madalena Costa

Heart rate fragmentation: a new method for the analysis of cardiac interbeat interval time series. The code provided can be run in Windows, Mac and Linux machines.

heart rate variability aging cardiovascular disease vagal tone time series analysis prediction of atrial fibrillation cardiac autonomic function prediction of cardiovascular events prediction of cognitive decline heart rate fragmentation

Published: Feb. 14, 2024. Version: 1.0.0

Database Credentialed Access

EHR-DS-QA: A Synthetic QA Dataset Derived from Medical Discharge Summaries for Enhanced Medical Information Retrieval Systems

Konstantin Kotschenreuther

Dataset consisting of question and answer pairs synthetically generated from medical discharge summaries, designed to facilitate the training and development of large language models specifically tailored for healthcare applications

mimic-iv clinical question-answering medical discharge summaries large language models

Published: Jan. 11, 2024. Version: 1.0.0

Database Credentialed Access

BOLD, a blood-gas and oximetry linked dataset

João Matos, Tristan Struja, Jack Gallifant, et al.

An open-source pulse oximetry and arterial blood gas dataset, derived from MIMIC-III, MIMIC-IV, and eICU-CRD

pulse oximetry health equity intensive care unit electronic health records

Published: Nov. 8, 2023. Version: 1.0

Database Credentialed Access

Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries

Melissa Poulsen, Vanessa Troiani, Philip Freda, et al.

The database contains a corpus of annotated data from the MIMIC-III Critical Care Database from a study that aimed to develop and apply an annotation schema to characterize opioid use disorder and related contextual factors.

opioid use disorder substance use natural language processing clinical notes

Published: Feb. 8, 2023. Version: 1.0.0

Database Restricted Access

Multimodal Physiological Monitoring During Virtual Reality Piloting Tasks

Hrishikesh Rao, Emilie Cowen, Sophia Yuditskaya, et al.

Physiologic and flight performance data from a virtual reality task. Data for the CogPilot Data Challenge.

Published: Aug. 25, 2022. Version: 1.0.0

Database Credentialed Access

Learning to Ask Like a Physician: a Discharge Summary Clinical Questions (DiSCQ) Dataset

Eric Lehman

Dataset of questions asked by medical experts about patients. Medical experts will read a discharge summary line-by-line and (1) ask any question that they may have and (2) record what in the text "triggered" them to ask their question.

question generation question answering machine learning

Published: July 28, 2022. Version: 1.0

Database Credentialed Access

GOSSIS-1-eICU, the eICU-CRD subset of the Global Open Source Severity of Illness Score (GOSSIS-1) dataset

Jesse Raffa, Alistair Johnson, Tom Pollard, et al.

GOSSIS-1 is an in-hospital mortality prediction algorithm for critical care patients. GOSSIS-1 was trained using data from three countries. This dataset corresponds with the USA subset of the GOSSIS-1 dataset for the 2022 publication below.

icu critical care severity of illness global gossis apache mortality prediction benchmarking

Published: July 20, 2022. Version: 1.0.0

Database Credentialed Access

Critical care database comprising patients with infection at Zigong Fourth People's Hospital

Ping Xu, Lin Chen, Zhongheng Zhang

Routinely collected data from critical care units at Zigong Fourth People’s Hospital, Sichuan, China for patients admitted between January 2019 and December 2020 Missing information on temperature are updated in the new version.

Published: June 30, 2022. Version: 1.1

Software Open Access

Model for Simulating ECG and PPG Signals with Arrhythmia Episodes

Andrius Sološenko, Andrius Petrėnas, Birutė Paliakaitė, et al.

A model is capable of simulating sinus rhythm, atrial fibrillation and ectopic beats in ECGs and PPGs as well as extreme bradycardia and ventricular tachycardia in PPGs. Different types of noises and artifacts can also be added to the waveforms.

atrial fibrillation arrhythmia noise tachycardia detection motion artifacts simulation bradycardia ppg ecg

Published: May 2, 2022. Version: 1.3.1