Resources
32 results for "discharge summary"
Database
Credentialed Access
MIMIC-IV-Ext-MedicalBench: Evaluating Large Language Models Towards Improved Medical Concept Extraction
Medical concept extraction from electronic health records underpins many downstream applications, yet remains challenging because medically meaningful concepts, such as diagnosis, are frequently implied rather than explicitly stated in medical narra…
Database
Contributor Review
ER-REASON: A Benchmark Dataset for LLM-Based Clinical Reasoning in the Emergency Room
The ER-Reason dataset is a benchmark designed to evaluate LLM-based clinical reasoning and decision-making in the emergency room (ER), a high-stakes setting where clinicians make rapid, consequential decisions across diverse patient presentations an…
Database
Credentialed Access
MIMIC-IV-ECHO-Ext-MIMICEchoQA: A Benchmark Dataset for Echocardiogram-Based Visual Question Answering
We present MIMICEchoQA, a benchmark dataset for echocardiogram-based question answering, built from the publicly available MIMIC-IV-ECHO database. Each echocardiographic study was paired with the closest discharge summary within a 7-day window, and …
Database
Credentialed Access
MIMIC-Ext-DrugDetection
This project shares a large, annotated drug detection dataset created from MIMIC-III/IV discharge summaries. The dataset was developed to address the challenge of identifying substance use behaviors in Electronic Health Records (EHRs), where critica…
Database
Credentialed Access
Annotated Social Determinants of Health Dataset for Adverse Pregnancy Outcomes
This project presents an annotated dataset derived from MIMIC-III and MIMIC-IV discharge summaries, focusing on key Social Determinants of Health (SDoH) factors—social support, occupation, and substance use—and their association with adverse pregnan…
Database
Credentialed Access
MeDiSumQA: Patient-Oriented Question-Answer Generation from Discharge Letters
While increasing patients' access to medical documents improves medical care, this benefit is limited by varying health literacy levels and complex medical terminology. Large language models (LLMs) offer solutions by simplifying medical information.…
Model
Credentialed Access
Shareable Artificial Intelligence to Extract Cancer Outcomes from Electronic Health Records for Precision Oncology Research
Databases that link molecular data to clinical outcomes can inform precision cancer research into novel prognostic and predictive biomarkers. However, outside of clinical trials, cancer outcomes are typically recorded only in text form within electr…
Database
Credentialed Access
Medication Extraction Labels for MIMIC-IV-Note Clinical Database
This dataset release provides medication extraction labels for a subset of 600 discharge summaries from the 2023 MIMIC-IV-Note dataset. These labels are consistent with the schema from the 2009 i2b2 Workshop on NLP Challenges dataset. We utilized a …
Database
Credentialed Access
MIMIC-IV-Note: Deidentified free-text clinical notes
The advent of large, open access text databases has driven advances in state-of-the-art model performance in natural language processing (NLP). The relatively limited amount of clinical data available for NLP has been cited as a significant barrier …
Database
Credentialed Access
Annotated Question-Answer Pairs for Clinical Notes in the MIMIC-III Database
Clinical question answering (QA) (or reading comprehension) aims to automatically answer questions from medical professionals based on clinical texts. We release this dataset, which contains 1287 annotated QA pairs on 36 sampled discharge summaries …