Resources
58 results for "generative modelling"
Database
Credentialed Access
Medication Extraction Labels for MIMIC-IV-Note Clinical Database
This dataset release provides medication extraction labels for a subset of 600 discharge summaries from the 2023 MIMIC-IV-Note dataset. These labels are consistent with the schema from the 2009 i2b2 Workshop on NLP Challenges dataset. We utilized a …
Database
Restricted Access
MIMIC-IV-Ext-Apixaban-Trial-Criteria-Questions
Large-language models (LLMs) show promise for extracting information from clinical notes. Deploying these models at scale can be challenging due to high computational costs, regulatory constraints, and privacy concerns. To address these challenges, …
Database
Credentialed Access
Chest ImaGenome Dataset
In recent years, with the release of multiple large datasets, automatic interpretation of chest X-ray (CXR) images with deep learning models have become feasible for specific abnormalities or for generating preliminary reports. However, despite repo…
Database
Restricted Access
Dataset for Segmentation and Classification of Cardiac Implantable Electronic Devices in Chest X-Rays
This dataset encompasses a comprehensive collection of 2,321 chest radiographs (originally DICOM, converted to PNG) and 11,072 smartphone images documenting various cardiac implantable electronic devices (CIEDs) such as implantable pacemakers, cardi…
Database
Credentialed Access
LLaVA-Rad MIMIC-CXR Annotations
LLaVA-Rad MIMIC-CXR features more accurate section extractions from MIMIC-CXR free-text radiology reports. Traditionally, rule-based methods were used to extract sections such as the reason for exam, findings, and impression. However, these approach…
Database
Credentialed Access
CXReasonBench: A Benchmark for Evaluating Structured Diagnostic Reasoning in Chest X-rays
Recent progress in Large Vision-Language Models (LVLMs) has enabled promising applications in medical tasks such as report generation and visual question answering. However, existing benchmarks focus mainly on the final diagnostic answer, offering l…
Database
Credentialed Access
Generalized Image Embeddings for the MIMIC Chest X-Ray dataset
This database contains image embeddings from the DICOM images of the MIMIC V2.0.0 Chest X-Ray database, generated using the approach described in “Simplified Transfer Learning for Chest Radiography Models Using Less Data”. The image embeddings are c…
Database
Open Access
Synthetic Mention Corpora for Disease Entity Recognition and Normalization
Named Entity Recognition (NER) and Entity Normalization (EN) are fundamental tasks in information extraction, particularly in the biomedical and clinical domains. NER identifies textual mentions of entities, while EN maps these mentions to unique id…
Database
Credentialed Access
MeDiSumQA: Patient-Oriented Question-Answer Generation from Discharge Letters
While increasing patients' access to medical documents improves medical care, this benefit is limited by varying health literacy levels and complex medical terminology. Large language models (LLMs) offer solutions by simplifying medical information.…
Database
Credentialed Access
Tasks 1 and 3 from Progress Note Understanding Suite of Tasks: SOAP Note Tagging and Problem List Summarization
Applying methods in natural language processing on electronic health records (EHR) data is a growing field. Existing corpus and annotation focus on modelling textual features and relation prediction [1] . However, there is a paucity of annotated cor…