Resources
51 results for "large language model"
Database
Open Access
ReXErr-v1: Clinically Meaningful Chest X-Ray Report Errors Derived from MIMIC-CXR
Interpreting medical images and writing radiology reports is a critical yet challenging task in healthcare. Despite their importance, both human-written and AI-generated reports are liable to errors, leaving a need for robust and representative data…
Database
Credentialed Access
EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries
Discharge summaries in Electronic Health Records (EHRs) are crucial for clinical decision-making, but their length and complexity make information extraction challenging, especially when dealing with accumulated summaries across multiple patient adm…
Database
Credentialed Access
Annotation dataset of social determinants of health from MIMIC-III Clinical Care Database
Social determinants of health (SDoH) have an important impact on patient outcomes but are incompletely collected from the electronic health records (EHR). This study researched the ability of large language models to extract SDoH from free text in E…
Database
Credentialed Access
Medication Extraction Labels for MIMIC-IV-Note Clinical Database
This dataset release provides medication extraction labels for a subset of 600 discharge summaries from the 2023 MIMIC-IV-Note dataset. These labels are consistent with the schema from the 2009 i2b2 Workshop on NLP Challenges dataset. We utilized a …
Database
Credentialed Access
EHRNote-ChatQA: A Benchmark for Evidence-Grounded Multi-Turn Clinical Question Answering over Longitudinal Discharge Summaries
EHRNote-ChatQA is a benchmark for evidence-grounded, multi-turn clinical question answering over longitudinal discharge summaries. Derived from de-identified MIMIC-IV data, it contains 967 patient-level samples covering one to five discharge summari…
Model
Credentialed Access
Clinical BERT Models Trained on Pseudo Re-identified MIMIC-III Notes
This project contains the weights of 7 different BERT models trained over a surrogate re-identified set of MIMIC-III (v1.4) notes. Each model is suitable for direct compatibility with the HuggingFace framework; users can easily load and apply the mo…
Database
Credentialed Access
RaDialog Instruct Dataset
Conversational AI tools that can generate and discuss clinically correct radiology reports for a given medical image have the potential to transform radiology. Such a human-in-the-loop radiology assistant could facilitate a collaborative diagnostic …
Database
Credentialed Access
MIMIC-Ext-SynNotes: Large-Scale Synthetic Clinical Notes via Rephrasing MIMIC-III/IV with LLMs
MIMIC-III and MIMIC-IV are foundational resources for clinical NLP, but their scale is modest relative to the data volumes needed to train language models. Building on recent advances in synthetic data generation through LLM-based rephrasing, we con…
Database
Credentialed Access
MS-CXR: Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing
We release a new dataset, MS-CXR, with locally-aligned phrase grounding annotations by board-certified radiologists to facilitate the study of complex semantic modelling in biomedical vision–language processing. The MS-CXR dataset provides 1162 imag…
Model
Credentialed Access
Fine-tuning foundational models to code diagnoses from veterinary health records
Veterinary medical records represent a large data resource for application to veterinary and One Health clinical research efforts. Use of the data is limited by interoperability challenges including inconsistent data formats and data siloing. Clinic…