Resources
138 results for "annotated"
Database
Credentialed Access
MIMIC-III-Ext-Notes
Unstructured clinical documentation, such as progress notes, contains rich contextual information critical for clinical decision-making but remains underutilized in computational research due to the limited availability of annotated datasets. The MI…
Database
Open Access
VitalDB Arrhythmia Database: An Anesthesiologist-Validated Large-Scale Intraoperative Arrhythmia Dataset with Beat and Rhythm Labels
Intraoperative cardiac arrhythmias present distinct characteristics and clinical challenges compared to non-surgical environments, yet publicly available electrocardiogram (ECG) databases have primarily focused on ambulatory and intensive care envir…
Database
Credentialed Access
Lunguage: A Benchmark for Structured and Sequential Chest X-ray Interpretation
Radiology reports convey detailed clinical observations and capture diagnostic reasoning that evolves over time. However, existing evaluation methods are limited to single-report settings and rely on coarse metrics that fail to capture fine-grained …
fine-grained structured reports
attribute-level clinical reasoning
medical text structuring
longitudinal clinical reasoning
chest x-ray report parsing
medical information structuring
benchmark dataset for radiology report
medical information extraction
structured radiology reports
temporal relation extraction
radiology report benchmarking
longitudinal clinical understanding
Database
Credentialed Access
PIFIR: PET-CT Invasive Fungal Infection Reports
Surveillance of invasive fungal infection (IFI) in clinical settings is a laborious process requiring a detailed review of patient medical history. One of the key sources of clinical information is imaging reports: radiologist-produced free-text rep…
Database
Credentialed Access
FFA-IR: Towards an Explainable and Reliable Medical Report Generation Benchmark
Automatic medical report generation (MRG) towards describing life-threatening lesions from given medical images, such as Chest X-ray and Fundus Fluorescein Angiography (FFA), has been a long-standing research topic in machine learning and automatic …
Database
Credentialed Access
MedDec: Medical Decisions for Discharge Summaries in the MIMIC-III Database
Medical decisions directly impact individuals’ health and well-being. Extracting decision spans from clinical notes plays a crucial role in understanding medical decision-making processes. The MedDec dataset includes expert-annotated decisions of te…
Database
Credentialed Access
CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports
Surveillance of invasive fungal infection (IFI) in clinical settings is a laborious process requiring a detailed review of patient medical history. One of the key sources of clinical information is cytology and histopathology reports: pathologist-pr…
Challenge
Credentialed Access
BioNLP Workshop 2023 Shared Task 1A: Problem List Summarization
Automatically summarizing patients’ main problems from the daily care notes in the electronic health record can help mitigate information and cognitive overload for clinicians and provide augmented intelligence via computerized diagnostic decision s…
Database
Open Access
PTB-XL, a large publicly available electrocardiography dataset
Electrocardiography (ECG) is a key diagnostic tool to assess the cardiac condition of a patient. Automatic ECG interpretation algorithms as diagnosis support systems promise large reliefs for the medical personnel - only on the basis of the number o…
Database
Restricted Access
VinDr-PCXR: An open, large-scale pediatric chest X-ray dataset for interpretation of common thoracic diseases
Computer-aided diagnosis systems in adult chest radiography (CXR) have recently achieved great success thanks to the availability of large-scale, annotated datasets and the advent of high-performance supervised learning algorithms. However, the deve…