Resources


Database Credentialed Access

Lunguage: A Benchmark for Structured and Sequential Chest X-ray Interpretation

Jong Hak Moon, Geon Choi, Paloma Rabaey, et al.

A radiologist-annotated benchmark of structured chest X-ray reports at single and sequential levels, comprising 1,473 reports across 18 relation types and 80 longitudinal cases.

fine-grained structured reports attribute-level clinical reasoning medical text structuring longitudinal clinical reasoning chest x-ray report parsing medical information structuring benchmark dataset for radiology report medical information extraction structured radiology reports temporal relation extraction radiology report benchmarking longitudinal clinical understanding

Published: Jan. 11, 2026. Version: 1.0.0

Database Credentialed Access

PIFIR: PET-CT Invasive Fungal Infection Reports

Vlada Rozova, Anna Khanina, Jeremy Ong, et al.

A corpus of PET-CT reports annotated for terminology relevant to fungal infections. Ideal for validation of named entity recognition and relation extraction methods.

nlp clinical documentation information extraction invasive fungal infections

Published: Feb. 27, 2025. Version: 1.0.0

Database Credentialed Access

FFA-IR: Towards an Explainable and Reliable Medical Report Generation Benchmark

Mingjie Li, Wenjia Cai, Rui Liu, et al.

Benchmark dataset for report generation based on fundus fluorescein angiography images and reports.

fundus fluorescein angiography medical report generation vision and language explainable and reliable evaluation

Published: Jan. 21, 2025. Version: 1.1.0

Database Credentialed Access

MedDec: Medical Decisions for Discharge Summaries in the MIMIC-III Database

Mohamed Elgaar, Jiali Cheng, Nidhi Vakil, et al.

Annotations of ten types of medical decisions from discharge summaries in the MIMIC-III database.

natural language processing medical decisions span classification mimic discharge summary

Published: Oct. 16, 2024. Version: 1.0.0

Database Credentialed Access

CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports

Vlada Rozova, Anna Khanina, Jasmine Teng, et al.

A corpus of cytology and histopathology reports annotated for terminology relevant to fungal infections. Ideal for validation of named entity recognition and relation extraction methods.

nlp clinical documentation information extraction invasive fungal infections

Published: Feb. 20, 2024. Version: 1.0.2

Challenge Credentialed Access

BioNLP Workshop 2023 Shared Task 1A: Problem List Summarization

Yanjun Gao, Dmitriy Dligach, Timothy Miller, et al.

This is the data storage for BioNLP Workshop Shared Task 1A: Problem List Summarization.

bionlp clinical natural language processing electronic health record summarization

Published: Nov. 12, 2023. Version: 2.0.0

Database Open Access

PTB-XL, a large publicly available electrocardiography dataset

Patrick Wagner, Nils Strodthoff, Ralf-Dieter Bousseljot, et al.

The PTB-XL ECG dataset is a large dataset of 21801 clinical 12-lead ECGs from 18869 patients of 10 second length. The raw signal data has been annotated by up to two cardiologists with 71 different ECG statements and is supplemented by rich metadata.

ptb-xl ptb electrocardiography ecg

Published: Nov. 9, 2022. Version: 1.0.3

Visualize waveforms

Database Restricted Access

VinDr-PCXR: An open, large-scale pediatric chest X-ray dataset for interpretation of common thoracic diseases

Hieu Huy Pham, Tien Thanh Tran, Ha Quy Nguyen

An open, large-scale pediatric chest X-ray dataset that contains both lesion-level labels and image-level labels for multiple findings and diseases for interpretation of common thoracic diseases.

Published: March 21, 2022. Version: 1.0.0

Database Credentialed Access

Chest ImaGenome Dataset

Joy Wu, Nkechinyere Agu, Ismini Lourentzou, et al.

The Chest ImaGenome dataset is a scene graph dataset with additional chronological comparison relations for chest X-rays. It is automatically derived from the MIMIC-CXR dataset. A manually annotated gold standard is also available for 500 patients.

scene graph visual dialogue object detection semantic reasoning bounding box knowledge graph explainability reasoning relation extraction chest disease progression cxr chest x-ray radiology multimodal visual question answering machine learning deep learning

Published: July 13, 2021. Version: 1.0.0

Database Credentialed Access

RadNLI: A natural language inference dataset for the radiology domain

Yasuhide Miura, Yuhao Zhang, Emily Tsai, et al.

A radiology NLI dataset introduced in the paper: Improving Factual Completeness and Consistency of Image-to-text Radiology Report Generation

Published: June 29, 2021. Version: 1.0.0