Resources


Database Contributor Review

CARMEN-I: A resource of anonymized electronic health records in Spanish and Catalan for training and testing NLP tools

Eulalia Farre Maduell, Salvador Lima-Lopez, Santiago Andres Frid, Artur Conesa, Elisa Asensio, Antonio Lopez-Rueda, Helena Arino, Elena Calvo, Maria Jesús Bertran, Maria Angeles Marcos, Montserrat Nofre Maiz, Laura Tañá Velasco, Antonia Marti, Ricardo Farreres, Xavier Pastor, Xavier Borrat Frigola, Martin Krallinger

CARMEN-I is a Spanish corpus of 2,000 clinical records from Hospital Clínic, Barcelona. It covers COVID-19 patients and comorbidities, serving as a resource for training clinical NLP models and researchers in NLP applied to clinical documents.

de-identification clinical ner anonymization

Published: April 20, 2024. Version: 1.0.1

Database Open Access

Facial and oral temperature data from a large set of human subject volunteers

Quanzeng Wang, Yangling Zhou, Pejman Ghassemi, Dwith Chenna, Michelle Chen, Jon Casamento, Joshua Pfefer, David Mcbride

Data for each subject include temperatures measured at 29 facial locations over four rounds with two IRTs, oral temperatures measured with a thermometer in two modes, subject demographics (gender, age, ethnicity), environmental conditions, etc.

clinical accuracy receiver operating characteristic curve infectious disease epidemics thermography fever screening inner canthus elevated body temperature facial maximum temperatures infrared thermograph pearson correlation coefficients thermometry

Published: May 24, 2023. Version: 1.0.0

Database Credentialed Access

RadGraph-XL: A Large-Scale Expert-Annotated Dataset for Entity and Relation Extraction from Radiology Reports

Jean-Benoit Delbrouck

RadGraph-XL is a large, expert-annotated dataset of 2,300 radiology reports covering multiple modalities and anatomies. It enables accurate extraction of clinical entities and relations for downstream medical AI tasks.

Published: Sept. 12, 2025. Version: 1.0.0

Database Restricted Access

HYAMD High-Resolution Fundus Image Dataset for age related macular degeneration (AMD) Diagnosis

Meishar Meisel, Benjamin Alfred Cohen, Meital Baskin, Beatrice Tiosano, Joachim Behar, Eran Berkowitz

The HYAMD dataset comprises 1,560 high-resolution fundus images from 325 patients, aimed at validating machine learning models for age-related macular degeneration (AMD) diagnosis.

Published: Sept. 9, 2025. Version: 1.0.0

Database Restricted Access

Community-Acquired Pneumonia, Endotypes and Phenotypes (NACef): Prospective, observational cohort study of Translational Medicine

Natalia Sanabria-Herrera, Esteban Garcia Gallo, Luis Felipe Reyes

Community-Acquired Pneumonia (CAP) poses a significant health risk, linked to high in-hospital morbidity and mortality rates. The dataset includes clinical details of 768 CAP patients at Clinica Universidad de La Sabana, Colombia.

Published: Aug. 21, 2025. Version: 2.0.1

Database Credentialed Access

Bridge2AI-Voice: An ethically-sourced, diverse voice dataset linked to health information

Yael Bensoussan, Alexandros Sigaras, Anais Rameau, Olivier Elemento, Maria Powell, David Dorr, Philip Payne, Vardit Ravitsky, Jean-Christophe Bélisle-Pipon, Alistair Johnson, Ruth Bahr, Stephanie Watts, Donald Bolser, Jennifer Siu, Jordan Lerner-Ellis, Frank Rudzicz, Micah Boyer, Samantha Salvi Cruz, Yassmeen Abdel-Aty, Toufeeq Ahmed Syed, James Anibal, Stephen Aradi, Ana Sophia Martinez, Shaheen Awan, Steven Bedrick, Alexander Bernier, Isaac Bevers, Rahul Brito, Selina Casalino, John Costello, Iris De Santiago, Enrique Diaz-Ocampo, Mohamed Ebraheem, Ellie Eiseman, Mahmoud Elmahdy, Emily Evangelista, Kenneth Fletcher, Hortense Gallois, Alexander Gelbard, Anna Goldenberg, Karim Hanna, William Hersh, Lochana Jayachandran, Kaley Jenney, Kathy Jenkins, Stacy Jo, Ayush Kalia, Andrea Krussel, Elisa Lapadula, Chloe Loewith, Radhika Mahajan, Vrishni Maharaj, Siyu Miao, Matthew Mifsud, Marian Mikhael, Elijah Moothedan, Yosef Nafii, Tempestt Neal, Karlee Newberry, Evan Ng, Christopher Nickel, Megan Urbano, Trevor Pharr, Matthew Pontell, Claire Premi-Bortolotto, JM Rahman, Sarah Rohde, Laurie Russell, Suketu Shah, Ahmed Shawkat, Elizabeth Silberholz, Duncan Sutherland, Venkata Swarna Mukhi, Jeffrey Tang, Jamie Toghranegar, Kimberly Vinson, Claire Wilson, Madeleine Zanin, Xijie Zeng, Theresa Zesiewicz, Robin Zhao, Pantelis Zisimopoulos, Satrajit Ghosh

A dataset of features from voice recordings and metadata to enable the development, benchmarking, and validation of clinically applicable machine-learning models for diagnosing a wide range of health conditions.

voice bridge2ai

Published: Aug. 18, 2025. Version: 2.0.1

Database Restricted Access

Microbiological, Immunological and Biochemical Characteristics of the Development of Ventilator Associated Pneumonia

Natalia Sanabria-Herrera, Ingrid Gisell Bustos Moya, Luis Felipe Reyes

This study explores the respiratory microbiome's role in nosocomial lower respiratory tract infections in ICU patients. Conducted in Chía, Colombia, revealing the microbiome's impact on disease progression.

Published: June 24, 2025. Version: 1.1.0

Challenge Credentialed Access

ArchEHR-QA: BioNLP at ACL 2025 Shared Task on Grounded Electronic Health Record Question Answering

Sarvesh Soni, Dina Demner-Fushman

A dataset for grounded question answering (QA) from electronic health records (EHRs).

electronic health record question answering clinicians patient portals

Published: April 11, 2025. Version: 1.2

Database Credentialed Access

MIMIC-III-Ext-tPatchGNN

Chenlong Yin, Weijia Zhang

The processed MIMIC-III dataset for the benchmark of Irregular Multivariate Time Series Forecasting: A Transformable Patching Graph Neural Networks Approach.

Published: April 9, 2025. Version: 1.0.0

Database Open Access

Synthetic Mention Corpora for Disease Entity Recognition and Normalization

Kuleen Sasse, John David Osborne

We present the Synthetic Mention Corpora for Disease Entity Recognition and Normalization, containing 128000 disease mentions from the UMLS disorder group, generated by an LLM. This corpus aims to improve these tasks in biomedical and clinical texts.

nlp named entity recognition data augmentation entity normalization machine learning

Published: Feb. 3, 2025. Version: 1.0.0