Resources


Software Open Access

Model for Simulating ECG and PPG Signals with Arrhythmia Episodes

Andrius Sološenko, Andrius Petrėnas, Birutė Paliakaitė, Vaidotas Marozas, Leif Sörnmo

A model is capable of simulating sinus rhythm, atrial fibrillation and ectopic beats in ECGs and PPGs as well as extreme bradycardia and ventricular tachycardia in PPGs. Different types of noises and artifacts can also be added to the waveforms.

atrial fibrillation arrhythmia noise motion artifacts bradycardia tachycardia simulation ppg detection ecg

Published: Aug. 30, 2021. Version: 1.3.0


Database Open Access

CPAP Pressure and Flow Data from a Local Trial of 30 Adults at the University of Canterbury

Ella Guy, Jennifer Knopp, Geoff Chase

A pressure and flow dataset was collected from a trial of 30 adults at the University of Canterbury undergoing CPAP therapy for a variety of instructed breath rates at PEEP levels of 4cmH2O and 7cmH2O.

cpap respiratory mechanics biomedical engineering respiratory modelling peep pulmonary mechanics

Published: July 19, 2021. Version: 1.0.0


Software Open Access

AFVP - A Realistic Ventricular Rhythm Model During AF

AFVP generates a synthesized beat-to-beat interval sequence of ventricular excitations with a realistic structure observed during AF.

interbeat rr interval simulation

Published: Aug. 9, 2007. Version: 1.0.0


Database Credentialed Access

RadGraph: Extracting Clinical Entities and Relations from Radiology Reports

Saahil Jain, Ashwin Agrawal, Adriel Saporta, Steven QH Truong, Du Nguyen Duong, Tan Bui, Pierre Chambon, Matthew Lungren, Andrew Ng, Curtis Langlotz, Pranav Rajpurkar

RadGraph is a dataset of entities and relations in full-text chest X-ray radiology reports, which are obtained using a novel information extraction (IE) schema to capture clinically relevant information in a radiology report.

natural language processing radiology entity and relation extraction graph multi-modal

Published: June 3, 2021. Version: 1.0.0


Database Open Access

MIMIC-IV demo data in the OMOP Common Data Model

Michael Kallfelz, Anna Tsvetkova, Tom Pollard, Manlik Kwong, Gigi Lipori, Vojtech Huser, Jeffrey Osborn, Sicheng Hao, Andrew Williams

Preliminary work to transform a MIMIC-IV demo dataset to the OMOP Common Data Model

omop common data model

Published: June 21, 2021. Version: 0.9


Database Credentialed Access

MIMIC-III and eICU-CRD: Feature Representation by FIDDLE Preprocessing

Shengpu Tang, Parmida Davarmanesh, Yanmeng Song, Danai Koutra, Michael Sjoding, Jenna Wiens

Features and labels from MIMIC-III and eICU-CRD produced by FIDDLE, an EHR preprocessing pipeline.

electronic health record preprocessing machine learning

Published: April 28, 2021. Version: 1.0.0


Database Credentialed Access

Annotated Question-Answer Pairs for Clinical Notes in the MIMIC-III Database

Xiang Yue, Xinliang Frederick Zhang, Huan Sun

Annotated Question Answering Pairs for Clinical Notes in the MIMIC-III Database

clinical question answering clinical nlp clinical reading comprehension

Published: Jan. 15, 2021. Version: 1.0.0


Database Restricted Access

Gout Emergency Department Chief Complaint Corpora

John David Osborne, Tobias O'Leary, Amy Mudano, James Booth, Giovanna Rosas, Gurusai Sujitha Peramsetty, Anthony Knighton, Jeff Foster, Ken Saag, Maria Ioana Danila

A corpus of chief complaints tagged with predicted gout flare status and chart reviewed gout flare status. Ideal for input to masked language model training to supplement lengthy clinical text notes.

emergency department gout nlp

Published: Oct. 19, 2020. Version: 1.0


Challenge Open Access

Electrocardiographic Imaging of Myocardial Infarction - The PhysioNet Computing in Cardiology Challenge 2007

The aim of Challenge 2007 is to establish how well one can characterize the location and extent of moderate to large, relatively compact infarcts using electrocardiographic evidence (supplemented by a model of the torso geometry and conductivity), i…

imaging challenge ecg

Published: Jan. 2, 2007. Version: 1.0.0


Software Open Access

CVSim

CVSim is a lumped-parameter model of the human cardiovascular system that has been developed and used for research and for teaching quantitative physiology courses at MIT and Harvard Medical School since 1984. The versions presented here have a grap…

cardiovascular simulation

Published: March 16, 2007. Version: 1.0.0