Resources


Database Open Access

CGMacros: a scientific dataset for personalized nutrition and diet monitoring

Ricardo Gutierrez-Osuna, David Kerr, Bobak Mortazavi, Anurag Das

CGMacros contains information from two continuous glucose monitors (CGM), food macronutrients, food photographs, physical activity, and anonymized participant demographics, anthropometric measurements and health parameters.

diabetes continuous glucose monitors machine learning obesity postprandial glucose response food macronutrients metabolic models food photographs personalized nutrition

Published: Jan. 28, 2025. Version: 1.0.0

Database Credentialed Access

SCRIPT X2B8 Dataset: per-day clinical features to model successful next-day extubation

Sam Fenske, Alec Peltekian, Mengjia Kang, Nikolay Markov, Anna Pawlowski, Luke Rasmussen, Thomas Stoeger, Benjamin Singer, GR Scott Budinger, Richard Wunderink, Alexander Misharin, Ankit Agrawal, Catherine A Gao

This dataset contains electronic health record (EHR) data from ICU patients receiving mechanical ventilation, aggregated on a daily basis, along with annotations of intubation, extubation, tracheostomy days, and cases of failed extubation. Data can b

Published: Jan. 28, 2025. Version: 1.0.0

Database Open Access

MUSIC (Sudden Cardiac Death in Chronic Heart Failure)

Alba Martin-Yebra, Juan Pablo Martínez, Pablo Laguna

The MUSIC study is a prospective, multicentre, longitudinal study designed to assess risk predictors of cardiac mortality and sudden cardiac death in ambulatory patients with chronic heart failure.

Published: Jan. 24, 2025. Version: 1.0.1

Visualize waveforms

Database Credentialed Access

LLaVA-Rad MIMIC-CXR Annotations

Juan Manuel Zambrano Chaves, Shih-Cheng Huang, Yanbo Xu, Hanwen Xu, Naoto Usuyama, Sheng Zhang, Fei Wang, Yujia Xie, Mahmoud Khademi, Ziyi Yang, Hany Awadalla, Julia Gong, Houdong Hu, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Yu Gu, Cliff Wong, Mu-Hsin Wei, Tristan Naumann, Muhao Chen, Matthew Lungren, Akshay Chaudhari, Serena Yeung, Curtis Langlotz, Sheng Wang, Hoifung Poon

This dataset provides GPT-4 extracted sections of radiology reports from MIMIC-CXR, complementing rule-based section extractions with additional reports with findings, and removing references to priors from findings.

Published: Jan. 24, 2025. Version: 1.0.0

Database Open Access

CheXmask Database: a large-scale dataset of anatomical segmentation masks for chest x-ray images

Nicolas Gaggion, Candelaria Mosquera, Martina Aineseder, Lucas Mansilla, Diego Milone, Enzo Ferrante

CheXmask Database is a 657,566 uniformly annotated chest radiographs with segmentation masks. Images were segmented using HybridGNet, with automatic quality control indicated by RCA scores.

automatic quality assesment chest x-ray segmentation medical image segmentation

Published: Jan. 22, 2025. Version: 1.0.0

Database Credentialed Access

TherLid: A Thermometry Linked Dataset

Jeremy Tan, Inês Martins, João Matos, Tiago Filipe Sousa Gonçalves, Tetsu Ohnuma, Jaime dos Santos Cardoso, Leo Anthony Celi, Vijay Krishnamoorthy, Andrea Lane, An Kwok Wong

TherLiD is an open-source dataset of 13,251 paired temperature readings (contact and infrared) from MIMIC-IV and eICU databases. With added demographics and derived data, it supports research on racial and ethnic disparities in infrared thermometry.

thermometry intensive care unit health equity electronic health records

Published: Jan. 21, 2025. Version: 1.0.0

Database Restricted Access

TAME Pain: Trustworthy AssessMEnt of Pain from Speech and Audio for the Empowerment of Patients

Tu-Quyen Dao, Eike Schneiders, Jennifer Williams, John Robert Bautista, Tina Seabrooke, Ganesh Vigneswaran, Rishik Kolpekwar, Ritwik Vashistha, Arya Farahi

TAME Pain is a dataset that captures acoustic signals of pain and is augmented by annotating every sentence the participant speaks with details such as background and foreground noise, speech errors, and non-speech vocal features.

audio speech pain cold pressor task

Published: Jan. 21, 2025. Version: 1.0.0

Database Credentialed Access

FFA-IR: Towards an Explainable and Reliable Medical Report Generation Benchmark

Mingjie Li, Wenjia Cai, Rui Liu, Yuetian Weng, Tengfei Liu, Cong Wang, xin chen, zhong liu, Caineng Pan, Mengke Li, yingfeng zheng, Yizhi Liu, Flora Salim, Karin Verspoor, Xiaodan Liang, Xiaojun Chang

Benchmark dataset for report generation based on fundus fluorescein angiography images and reports.

fundus fluorescein angiography medical report generation vision and language explainable and reliable evaluation

Published: Jan. 21, 2025. Version: 1.1.0

Database Credentialed Access

Medical-CXR-VQA dataset: A Large-Scale LLM-Enhanced Medical Dataset for Visual Question Answering on Chest X-Ray Images

Xinyue Hu, Lin Gu, Kazuma Kobayashi, liangchen liu, Mengliang Zhang, Tatsuya Harada, Ronald Summers, Yingying Zhu

Medical-CXR-VQA provides a large-scale LLM-enhanced dataset for visual question answering in medical chest x-ray images.

Published: Jan. 21, 2025. Version: 1.0.0

Database Restricted Access

MIMIC-IV-Ext-DiReCT

Bowen Wang, Jiuyang Chang, Yiming Qian

A diagnostic reasoning dataset designed to evaluate the performance of large language models in aligning with human doctors when making diagnoses from clinical notes.

Published: Jan. 21, 2025. Version: 1.0.0