Resources


Model Credentialed Access

Clinical-T5: Large Language Models Built Using MIMIC Clinical Text

Eric Lehman, Alistair Johnson

We train a T5-Base and T5-Large from scratch on MIMIC-III and MIMIC-IV. Additionally, we further pretrain T5-Base and SciFive on notes from MIMIC. We release these model weights on PhysioNet.

Published: Jan. 25, 2023. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Ext Clinical Decision Making: A MIMIC-IV Derived Dataset for Evaluation of Large Language Models on the Task of Clinical Decision Making for Abdominal Pathologies

Paul Hager, Friederike Jungmann, Daniel Rueckert

A curated set of ED clinical decision making cases for four abdominal pathologies. Each case contains the exams required to diagnose including HPI, physical examination, laboratory tests, and imaging. Relevant treatment information is also included.

clinical decision making abdominal pathologies treatment plan emergency room diagnosis large language models

Published: July 8, 2024. Version: 1.1

Database Credentialed Access

EHR-ReasonCon: Reasoning-Intensive Consistency Verification Between Clinical Notes and Structured Tables in Electronic Health Records

Yeonsu Kwon, Jiho Kim, JunSeong Choi, et al.

Reasoning-Intensive Consistency Verification Between Clinical Notes and Structured Tables in Electronic Health Records

Published: Sept. 15, 2026. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Ext-BHC: Labeled Clinical Notes Dataset for Hospital Course Summarization

Asad Aali, Dave Van Veen, Yamin Arefeen, et al.

This dataset presents a collection of preprocessed and labeled clinical notes derived from "MIMIC-IV-Note", and aims to facilitate the development of ML models focused on summarizing brief hospital courses (BHC) from clinical notes.

natural language processing text summarization brief hospital course machine learning clinical notes

Published: Feb. 3, 2025. Version: 1.2.0

Model Credentialed Access

Asclepius-R : Clinical Large Language Model Built On MIMIC-III Discharge Summaries

Sunjun Kweon, Junu Kim, Jiyoun Kim, et al.

Asclepius: Publicly Available Clinical Large Language Models with Synthetic Clinical Notes Asclepius-R: A instruction-finetuned large language model with MIMIC-III clinical notes

synthetic clinical notes synthetic notes asclepius open-source llm clinical llm large language model clinical notes

Published: March 25, 2024. Version: 1.1.0

Database Credentialed Access

NCH Sleep DataBank: A Large Collection of Real-world Pediatric Sleep Studies with Longitudinal Clinical Data

Harlin Lee, Boyue Li, Yungui Huang, et al.

The NCH Sleep DataBank includes 3,984 pediatric sleep studies on 3,673 unique patients conducted at Nationwide Children's Hospital between 2017 and 2019. It contains polysomnography (PSG), clinical annotations, and longitudinal clinical data.

eeg ehr pediatrics polysomnography clinical decision support sleep study sleep disorders ecg electronic health records

Published: Oct. 27, 2021. Version: 3.1.0

Database Credentialed Access

MIMIC-Ext-SynNotes: Large-Scale Synthetic Clinical Notes via Rephrasing MIMIC-III/IV with LLMs

Jinghui Liu, Sarvesh Soni, Anthony Nguyen

Large-scale synthetic clinical notes, produced by rephrasing all MIMIC-III and MIMIC-IV with open-weight LLMs to support clinical language model development.

natural language processing data augmentation mimic large language models synthetic data pretraining clinical notes

Published: Oct. 5, 2026. Version: 1.0

Database Credentialed Access

MIMIC-CXR-Ext-MIMIC-CXR-DB: Linking MIMIC-IV Chest Radiographs with Rich and Harmonized Clinical Context

Houcemeddine Turki, Lukman Ismaila, Ahmed Ben Salem, et al.

MIMIC-CXR-DB is a de-identified database linking EHR data with chest X-ray metadata and structured clinical findings. It supports multimodal research by integrating imaging, laboratory, diagnostic, and ontology-linked information.

mimic-iv chest x-ray imaging clinical findings multimodal research ehr integration ontology-based linking

Published: Oct. 1, 2026. Version: 1.0

Database Credentialed Access

MIMIC-IV-Ext-EntityCoding: Clinical Named Entity Recognition and Assertion Classification Dataset for ICD Coding

James C Douglas, Yidong Gan, Ben Hachey, et al.

Clinical Named Entity Recognition and Assertion Classification annotations for 400 MIMIC-IV discharge summaries, designed to support ICD-10-CM/PCS coding research.

clinical nlp clinical annotation named entity recognition discharge summary clinical coding assertion classification

Published: Sept. 23, 2026. Version: 1.0.0

Database Credentialed Access

MIMIC-III-Ext-VeriFact-BHC: Labeled Propositions From Brief Hospital Course Summaries for Long-form Clinical Text Evaluation

Philip Chung, Akshay Swaminathan, Alex Goodell, et al.

A clinician-labeled dataset for fact-checking long-form clinical text against patient EHRs. The dataset contains LLM-written and human-written Brief Hospital Course summaries decomposed to atomic claim and sentence propositions with annotations.

natural language processing clinical informatics formal logic chart review text embedding artificial intelligence brief hospital course long-form text llm evaluation logical atomism retrieval-augmented generation text reranking clinical medicine atomic claim fact verification hybrid retrieval llm-as-a-judge large language models electronic health records clinical notes

Published: Aug. 27, 2026. Version: 1.1.0