Resources


Database Credentialed Access

PatientSim: A Persona-Driven Simulator for Realistic Doctor-Patient Interactions

Daeun Kyung, Hyunseung Chung, Seongsu Bae, et al.

PatientSim is a patient simulator that simulates realistic and diverse personas for clinical scenarios, enabling robust training and evaluation of doctor-patient interactions in multi-turn dialogues.

multi-turn dialogue llm simulation doctor-patient consultation electronic health records

Published: Oct. 18, 2025. Version: 1.0.0

Database Credentialed Access

Annotated Social Determinants of Health Dataset for Adverse Pregnancy Outcomes

Nidhi Soley, MaKhaila Bentil, Jash Shah, et al.

This project provides a manually annotated dataset of social determinants of health—social support, occupation, and substance use—linked to pregnancy outcomes, extracted from MIMIC-III and MIMIC-IV discharge summary notes.

Published: Aug. 4, 2025. Version: 1.0.0

Database Credentialed Access

EHRCon: Dataset for Checking Consistency between Unstructured Notes and Structured Tables in Electronic Health Records

Yeonsu Kwon, Jiho Kim, Gyubok Lee, et al.

Dataset for Checking Consistency between Unstructured Notes and Structured Tables in Electronic Health Records

Published: March 19, 2025. Version: 1.0.1

Model Credentialed Access

Shareable Artificial Intelligence to Extract Cancer Outcomes from Electronic Health Records for Precision Oncology Research

Kenneth Kehl, Pavel Trukhanov, Christopher Fong, et al.

The DFCI-imaging-student and DFCI-medonc-student AI models for extracting cancer outcomes from imaging reports and medical oncologist notes from electronic health records.

Published: Oct. 24, 2024. Version: 1.0.0

Database Credentialed Access

EHRXQA: A Multi-Modal Question Answering Dataset for Electronic Health Records with Chest X-ray Images

Seongsu Bae, Daeun Kyung, Jaehee Ryu, et al.

We present EHRXQA, the first multi-modal EHR QA dataset combining structured patient records with aligned chest X-ray images. EHRXQA contains a comprehensive set of QA pairs covering image-related, table-related, and image+table-related questions.

question answering evaluation chest x-ray multi-modal question answering ehr question answering semantic parsing benchmark visual question answering electronic health records machine learning deep learning

Published: July 23, 2024. Version: 1.0.0

Challenge Credentialed Access

Discharge Me: BioNLP ACL'24 Shared Task on Streamlining Discharge Documentation

Justin Xu

Data for the "Discharge Me!" Shared Task on Streamlining Discharge Documentation for BioNLP ACL'24

generation bionlp acl discharge summary

Published: April 12, 2024. Version: 1.3

Database Credentialed Access

RadCoref: Fine-tuning coreference resolution for different styles of clinical narratives

Yuxiang Liao, Hantao Liu, Irena Spasic

RadCoref is a small subset of MIMIC-CXR with manually annotated coreference mentions and clusters. Based on the annotated data, we fine-tuned a deep neural model and used it to annotate the whole MIMIC-CXR dataset. Both data are available.

coreference resolution natural language processing radiology

Published: Jan. 30, 2024. Version: 1.0.0

Database Credentialed Access

BOLD, a blood-gas and oximetry linked dataset

João Matos, Tristan Struja, Jack Gallifant, et al.

An open-source pulse oximetry and arterial blood gas dataset, derived from MIMIC-III, MIMIC-IV, and eICU-CRD

pulse oximetry health equity intensive care unit electronic health records

Published: Nov. 8, 2023. Version: 1.0

Database Credentialed Access

CLIP: A Dataset for Extracting Action Items for Physicians from Hospital Discharge Notes

James Mullenbach, Yada Pruksachatkun, Sean Adler, et al.

Clinical action items annotated over MIMIC-III. 718 discharge summaries are labeled at a sentence- and character-level with multiple action labels including Appointment, Lab, Procedure, Medication, Imaging, Patient Instructions, and Other.

Published: June 21, 2021. Version: 1.0.0

Database Credentialed Access

EHR-ReasonCon: Reasoning-Intensive Consistency Verification Between Clinical Notes and Structured Tables in Electronic Health Records

Yeonsu Kwon, Jiho Kim, JunSeong Choi, et al.

Reasoning-Intensive Consistency Verification Between Clinical Notes and Structured Tables in Electronic Health Records

Published: Sept. 15, 2026. Version: 1.0.0