Resources
53 results for "mimic-iii"
Model
Credentialed Access
Clinical BERT Models Trained on Pseudo Re-identified MIMIC-III Notes
This project contains the weights of 7 different BERT models trained over a surrogate re-identified set of MIMIC-III (v1.4) notes. Each model is suitable for direct compatibility with the HuggingFace framework; users can easily load and apply the mo…
Database
Credentialed Access
Annotation dataset of social determinants of health from MIMIC-III Clinical Care Database
Social determinants of health (SDoH) have an important impact on patient outcomes but are incompletely collected from the electronic health records (EHR). This study researched the ability of large language models to extract SDoH from free text in E…
Database
Credentialed Access
Annotated Question-Answer Pairs for Clinical Notes in the MIMIC-III Database
Clinical question answering (QA) (or reading comprehension) aims to automatically answer questions from medical professionals based on clinical texts. We release this dataset, which contains 1287 annotated QA pairs on 36 sampled discharge summaries …
Database
Credentialed Access
MIMIC-III-Ext-VeriFact-BHC: Labeled Propositions From Brief Hospital Course Summaries for Long-form Clinical Text Evaluation
The VeriFact-BHC dataset is designed to verify the factuality of long-form text written about a patient against their own electronic health record. There is increasing interest in using large language models (LLMs) to generate clinical text in patie…
natural language processing
clinical informatics
formal logic
chart review
text embedding
artificial intelligence
brief hospital course
long-form text
llm evaluation
logical atomism
retrieval-augmented generation
text reranking
clinical medicine
atomic claim
fact verification
hybrid retrieval
llm-as-a-judge
large language models
electronic health records
clinical notes
Model
Credentialed Access
Asclepius-R : Clinical Large Language Model Built On MIMIC-III Discharge Summaries
The development of large language models tailored for handling patients’ clinical notes is often hindered by the limited accessibility and usability of these notes due to strict privacy regulations. To address these challenges, we first create synth…
Database
Credentialed Access
Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries
Opioid use disorder (OUD) is underdiagnosed in health system settings, limiting research on OUD using electronic health records (EHRs). Medical encounter notes can enrich structured EHR data with documented signs and symptoms of OUD and social risks…
Database
Credentialed Access
Nosocomial Risk Datasets from MIMIC-III
Reliable longitudinal risk prediction for hospitalized patients is needed to provide quality care. Our goal is to foster the development of generalizable models capable of leveraging clinical notes to predict healthcare-associated diseases 24–96 hou…
Database
Credentialed Access
Synthetic Acute Hypotension and Sepsis Datasets Based on MIMIC-III and Published as Part of the Health Gym Project
These two synthetic datasets comprise vital signs, laboratory test results, administered fluid boluses and vasopressors for 3,910 patients with acute hypotension and for 2,164 patients with sepsis in the Intensive Care Unit (ICU). The patient cohort…
Model
Credentialed Access
Transformer models trained on MIMIC-III to generate synthetic patient notes
Natural Language Processing can help to unlock knowledge in the vast troves of unstructured clinical data that are collected during patient care. Patient confidentiality presents a barrier to the sharing and analysis of such data, however, meaning t…
Database
Credentialed Access
Phenotype Annotations for Patient Notes in the MIMIC-III Database
A crucial step within secondary analysis of electronic health records (EHRs) is to identify the patient cohort under investigation. While EHRs contain medical billing codes that aim to represent the conditions and treatments patients may have, much …