Resources


Database Restricted Access

ALarms, Outcomes Telemetry with Timing (ALOTT): a Bedside-EMR Database

John Lawrence, Mike Rayo, Timothy Huerta

Carescape is a deidentified 9 month period of high resolution telemetry data linked to Electronic Medical Records.

Published: March 19, 2025. Version: 1.0.0

Challenge Credentialed Access

CXR-LT: Multi-Label Long-Tailed Classification on Chest X-Rays

Gregory Holste, Mingquan Lin, Song Wang, Yiliang Zhou, Yishu Wei, Hao Chen, Atlas Wang, Yifan Peng

CXR-LT 2024 was a challenge for long-tailed, multi-label, and zero-shot thorax disease classification on chest X-rays, held at MICCAI 2024. This page contains long-tailed labels for 45 diseases from the CXR-LT 2024 and 2023 challenges.

disease classification artificial intelligence chest x-ray deep learning computer-aided diagnosis long-tailed learning cardiopulmonary disease zero-shot learning

Published: March 19, 2025. Version: 2.0.0

Database Credentialed Access

EHRCon: Dataset for Checking Consistency between Unstructured Notes and Structured Tables in Electronic Health Records

Yeonsu Kwon, Jiho Kim, Gyubok Lee, Seongsu Bae, Daeun Kyung, Wonchul Cha, Tom Pollard, Alistair Johnson, Edward Choi

Dataset for Checking Consistency between Unstructured Notes and Structured Tables in Electronic Health Records

Published: March 19, 2025. Version: 1.0.1

Database Credentialed Access

PIFIR: PET-CT Invasive Fungal Infection Reports

Vlada Rozova, Anna Khanina, Jeremy Ong, Ramin Alipour, Leon Worth, Monica Slavin, Karin Thursky, Karin Verspoor

A corpus of PET-CT reports annotated for terminology relevant to fungal infections. Ideal for validation of named entity recognition and relation extraction methods.

nlp clinical documentation information extraction invasive fungal infections

Published: Feb. 27, 2025. Version: 1.0.0

Database Restricted Access

LATTE-CXR: Locally Aligned TexT and imagE, Explainable dataset for Chest X-Rays

Elham Ghelichkhan, Tolga Tasdizen

This dataset includes bounding box-statement pairs for chest X-ray images, derived from radiologists’ eye-tracking data (for explainability) and annotations, for local visual-language models.

eye-tracking chest x-ray dataset automatically generated dataset caption-guided object detection image captioning with region-level description grounded radiology report generation phrase grounding xai multi-modal learning local visual-language models localization

Published: Feb. 4, 2025. Version: 1.0.0

Database Restricted Access

Application of Med-PaLM 2 in the refinement of MIMIC-CXR labels

Kendall Park, Rory Sayres, Andrew Sellergren, Tom Pollard, Fayaz Jamil, Timo Kohlberger, Charles Lau, Atilla Kiraly

This work further refines the labels associated with CheXpert in MIMIC-CXR-JPG 2.0.0 by filtering with Med-PaLM 2 followed by verification by manual review by three US board-certified radiologists.

mimic-cxr labels

Published: Feb. 4, 2025. Version: 1.0.0

Database Restricted Access

TAME Pain: Trustworthy AssessMEnt of Pain from Speech and Audio for the Empowerment of Patients

Tu-Quyen Dao, Eike Schneiders, Jennifer Williams, John Robert Bautista, Tina Seabrooke, Ganesh Vigneswaran, Rishik Kolpekwar, Ritwik Vashistha, Arya Farahi

TAME Pain is a dataset that captures acoustic signals of pain and is augmented by annotating every sentence the participant speaks with details such as background and foreground noise, speech errors, and non-speech vocal features.

audio speech pain cold pressor task

Published: Jan. 21, 2025. Version: 1.0.0

Database Restricted Access

MIMIC-IV-Ext-DiReCT

Bowen Wang, Jiuyang Chang, Yiming Qian

A diagnostic reasoning dataset designed to evaluate the performance of large language models in aligning with human doctors when making diagnoses from clinical notes.

Published: Jan. 21, 2025. Version: 1.0.0

Database Credentialed Access

Northwestern ICU (NWICU) database

Dana Moukheiber, William Temps, Bhadrappa Molgi, Yikuan Li, Alice Lu, Prasanth Nannapaneni, Abdulrahman Chahin, Sicheng Hao, Felipe Torres Fabregas, Leo Anthony Celi, Adrian Wong, Maxwell Lloyd, Xavier Borrat Frigola, Hyung-Chul Lee, Daniel Schneider, Tom Pollard, Yuan Luo, Abel Kho, Roger Mark

A freely available COVID-rich ICU database comprising de-identified health-related data from Northwestern Memorial Health Center (NHMC).

Published: Nov. 19, 2024. Version: 0.1.0

Model Credentialed Access

Shareable Artificial Intelligence to Extract Cancer Outcomes from Electronic Health Records for Precision Oncology Research

Kenneth Kehl, Pavel Trukhanov, Christopher Fong, Justin Jee, Karl Pichotta, Morgan Paul, Chelsea Nichols, Michele Waters, Nikolaus Schultz, Deborah Schrag

The DFCI-imaging-student and DFCI-medonc-student AI models for extracting cancer outcomes from imaging reports and medical oncologist notes from electronic health records.

Published: Oct. 24, 2024. Version: 1.0.0