Resources


Database Credentialed Access

MIMIC-III-Ext-VeriFact-BHC: Labeled Propositions From Brief Hospital Course Summaries for Long-form Clinical Text Evaluation

Philip Chung, Akshay Swaminathan, Alex Goodell, et al.

A clinician-labeled dataset for fact-checking long-form clinical text against patient EHRs. The dataset contains LLM-written and human-written Brief Hospital Course summaries decomposed to atomic claim and sentence propositions with annotations.

artificial intelligence natural language processing clinical notes electronic health records brief hospital course large language models long-form text chart review text reranking atomic claim hybrid retrieval clinical informatics clinical medicine fact verification retrieval-augmented generation logical atomism text embedding formal logic llm-as-a-judge llm evaluation

Published: April 9, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-III-Ext-tPatchGNN

Chenlong Yin, Weijia Zhang

The processed MIMIC-III dataset for the benchmark of Irregular Multivariate Time Series Forecasting: A Transformable Patching Graph Neural Networks Approach.

Published: April 9, 2025. Version: 1.0.0

Database Restricted Access

ALarms, Outcomes Telemetry with Timing (ALOTT): a Bedside-EMR Database

John Lawrence, Mike Rayo, Timothy Huerta

Carescape is a deidentified 9 month period of high resolution telemetry data linked to Electronic Medical Records.

Published: March 19, 2025. Version: 1.0.0

Challenge Credentialed Access

CXR-LT: Multi-Label Long-Tailed Classification on Chest X-Rays

Gregory Holste, Mingquan Lin, Song Wang, et al.

CXR-LT 2024 was a challenge for long-tailed, multi-label, and zero-shot thorax disease classification on chest X-rays, held at MICCAI 2024. This page contains long-tailed labels for 45 diseases from the CXR-LT 2024 and 2023 challenges.

disease classification artificial intelligence chest x-ray computer-aided diagnosis long-tailed learning cardiopulmonary disease zero-shot learning deep learning

Published: March 19, 2025. Version: 2.0.0

Database Credentialed Access

EHRCon: Dataset for Checking Consistency between Unstructured Notes and Structured Tables in Electronic Health Records

Yeonsu Kwon, Jiho Kim, Gyubok Lee, et al.

Dataset for Checking Consistency between Unstructured Notes and Structured Tables in Electronic Health Records

Published: March 19, 2025. Version: 1.0.1

Database Credentialed Access

PIFIR: PET-CT Invasive Fungal Infection Reports

Vlada Rozova, Anna Khanina, Jeremy Ong, et al.

A corpus of PET-CT reports annotated for terminology relevant to fungal infections. Ideal for validation of named entity recognition and relation extraction methods.

nlp clinical documentation information extraction invasive fungal infections

Published: Feb. 27, 2025. Version: 1.0.0

Database Restricted Access

LATTE-CXR: Locally Aligned TexT and imagE, Explainable dataset for Chest X-Rays

Elham Ghelichkhan, Tolga Tasdizen

This dataset includes bounding box-statement pairs for chest X-ray images, derived from radiologists’ eye-tracking data (for explainability) and annotations, for local visual-language models.

eye-tracking chest x-ray dataset automatically generated dataset caption-guided object detection image captioning with region-level description grounded radiology report generation phrase grounding xai multi-modal learning local visual-language models localization

Published: Feb. 4, 2025. Version: 1.0.0

Database Restricted Access

Application of Med-PaLM 2 in the refinement of MIMIC-CXR labels

Kendall Park, Rory Sayres, Andrew Sellergren, et al.

This work further refines the labels associated with CheXpert in MIMIC-CXR-JPG 2.0.0 by filtering with Med-PaLM 2 followed by verification by manual review by three US board-certified radiologists.

mimic-cxr labels

Published: Feb. 4, 2025. Version: 1.0.0

Database Restricted Access

TAME Pain: Trustworthy AssessMEnt of Pain from Speech and Audio for the Empowerment of Patients

Tu-Quyen Dao, Eike Schneiders, Jennifer Williams, et al.

TAME Pain is a dataset that captures acoustic signals of pain and is augmented by annotating every sentence the participant speaks with details such as background and foreground noise, speech errors, and non-speech vocal features.

audio speech pain cold pressor task

Published: Jan. 21, 2025. Version: 1.0.0

Database Restricted Access

MIMIC-IV-Ext-DiReCT

Bowen Wang, Jiuyang Chang, Yiming Qian

A diagnostic reasoning dataset designed to evaluate the performance of large language models in aligning with human doctors when making diagnoses from clinical notes.

Published: Jan. 21, 2025. Version: 1.0.0