Resources


Database Open Access

CGMacros: a scientific dataset for personalized nutrition and diet monitoring

Ricardo Gutierrez-Osuna, David Kerr, Bobak Mortazavi, et al.

CGMacros contains information from two continuous glucose monitors (CGM), food macronutrients, food photographs, physical activity, and anonymized participant demographics, anthropometric measurements and health parameters.

diabetes machine learning continuous glucose monitors obesity postprandial glucose response food macronutrients metabolic models food photographs personalized nutrition

Published: Jan. 28, 2025. Version: 1.0.0

Database Credentialed Access

TherLid: A Thermometry Linked Dataset

Jeremy Tan, Inês Martins, João Matos, et al.

TherLiD is an open-source dataset of 13,251 paired temperature readings (contact and infrared) from MIMIC-IV and eICU databases. With added demographics and derived data, it supports research on racial and ethnic disparities in infrared thermometry.

thermometry intensive care unit health equity electronic health records

Published: Jan. 21, 2025. Version: 1.0.0

Database Credentialed Access

Medical-CXR-VQA dataset: A Large-Scale LLM-Enhanced Medical Dataset for Visual Question Answering on Chest X-Ray Images

Xinyue Hu, Lin Gu, Kazuma Kobayashi, et al.

Medical-CXR-VQA provides a large-scale LLM-enhanced dataset for visual question answering in medical chest x-ray images.

Published: Jan. 21, 2025. Version: 1.0.0

Database Credentialed Access

Northwestern ICU (NWICU) database

Dana Moukheiber, William Temps, Bhadrappa Molgi, et al.

A freely available COVID-rich ICU database comprising de-identified health-related data from Northwestern Memorial Health Center (NHMC).

Published: Nov. 19, 2024. Version: 0.1.0

Database Credentialed Access

MedDec: Medical Decisions for Discharge Summaries in the MIMIC-III Database

Mohamed Elgaar, Jiali Cheng, Nidhi Vakil, et al.

Annotations of ten types of medical decisions from discharge summaries in the MIMIC-III database.

natural language processing medical decisions span classification discharge summary mimic

Published: Oct. 16, 2024. Version: 1.0.0

Database Contributor Review

A multimodal dental dataset facilitating machine learning research and clinic services

Wenjing Liu, Yunyou Huang, Suqin Tang

A new dental dataset that contains 169 patients, three commonly used dental image models, and images of various health conditions of the oral cavity.

Published: Oct. 11, 2024. Version: 1.1.0

Database Credentialed Access

ENCoDE, mEasuring skiN Color to correct pulse Oximetry DisparitiEs: skin tone and clinical data from a prospective trial on acute care patients.

Sicheng Hao, Katelyn Dempsey, João Matos, et al.

A prospective collected EHR-linked skin tone measurements database in OMOP format with emphasis on pulse oximetry disparities.

Published: Aug. 22, 2024. Version: 1.0.0

Database Credentialed Access

EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries

Sunjun Kweon, Jiyoun Kim, Heeyoung Kwak, et al.

An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries

Published: June 26, 2024. Version: 1.0.1

Database Open Access

PADS - Parkinsons Disease Smartwatch dataset

Julian Varghese, Alexander Brenner, Lucas Plagwitz, et al.

The PADS dataset contains smartwatch-based records from interactive neurological assessments of Parkinsons disease patients, differential diagnoses and healthy controls. The data is complemented with non-motor symptoms and medical history information

wearables movement disorders parkinsons disease

Published: March 25, 2024. Version: 1.0.0

Database Credentialed Access

RadCoref: Fine-tuning coreference resolution for different styles of clinical narratives

Yuxiang Liao, Hantao Liu, Irena Spasic

RadCoref is a small subset of MIMIC-CXR with manually annotated coreference mentions and clusters. Based on the annotated data, we fine-tuned a deep neural model and used it to annotate the whole MIMIC-CXR dataset. Both data are available.

natural language processing coreference resolution radiology

Published: Jan. 30, 2024. Version: 1.0.0