Resources
156 results for "MIMIC"
Model
Credentialed Access
Transformer models trained on MIMIC-III to generate synthetic patient notes
Natural Language Processing can help to unlock knowledge in the vast troves of unstructured clinical data that are collected during patient care. Patient confidentiality presents a barrier to the sharing and analysis of such data, however, meaning t…
Database
Credentialed Access
Phenotype Annotations for Patient Notes in the MIMIC-III Database
A crucial step within secondary analysis of electronic health records (EHRs) is to identify the patient cohort under investigation. While EHRs contain medical billing codes that aim to represent the conditions and treatments patients may have, much …
Database
Open Access
Clinical data from the MIMIC-II database for a case study on indwelling arterial catheters
This dataset was created for the purpose of a case study in the book: Secondary Analysis of Electronic Health Records, published by Springer in 2016. In particular, the dataset was used throughout Chapter 16 (Data Analysis) by Raffa J. et al. to inv…
Database
Open Access
MIMIC Database
The MIMIC Database includes data recorded from over 90 ICU patients. The data in each case include signals and periodic measurements obtained from a bedside monitor as well as clinical data obtained from the patient's medical record. The recordings …
Database
Restricted Access
MIMIC-III-Ext-Synthetic-Clinical-Trial-Questions
Large-language models (LLMs) show promise for extracting information from clinical notes. Deploying these models at scale can be challenging due to high computational costs, regulatory constraints, and privacy concerns. To address these challenges, …
Database
Credentialed Access
CAD-Chest: Comprehensive Annotation of Diseases based on MIMIC-CXR Radiology Report
Several extant chest X-ray (CXR) datasets predominantly comprise binary disease labels and exhibit a deficiency in providing comprehensive disease-related information. Crucial facets of disease management, including disease severity, diagnostic unce…
Database
Credentialed Access
Medical Expert Annotations of Unsupported Facts in Doctor-Written and LLM-Generated Patient Summaries
Large language models in healthcare can generate informative patient summaries while reducing the documentation workload of healthcare professionals. However, these models are prone to producing hallucinations, that is, generating unsupported inform…
Database
Credentialed Access
DrugEHRQA: A Question Answering Dataset on Structured and Unstructured Electronic Health Records For Medicine Related Queries
Electronic Health Records (EHR) contain patient records, stored in structured tables as well as unstructured clinical notes. The information in structured and unstructured EHR records is not strictly disjoint: information may be duplicated, contradi…
Database
Credentialed Access
RadGraph: Extracting Clinical Entities and Relations from Radiology Reports
RadGraph is a dataset of entities and relations in full-text radiology reports. We designed a novel information extraction (IE) schema to structure clinical information in a radiology report with four entities and three relations. Our train set cons…
Database
Restricted Access
CXRGraph: Using Information Extraction to Normalize the Training Data for Automatic Radiology Report Generation
CXRGraph is a dataset of structured radiology reports dataset following the RadGraph format, which has been tailored for the Automatic Radiology Report Generation (ARRG) task. CXRGraph assorts clinical information from full-text radiology reports in…