Resources


Model Credentialed Access

EntityBERT: BERT-based Models Pretrained on MIMIC-III with or without Entity-centric Masking Strategy for the Clinical Domain

Chen Lin, Steven Bethard, Guergana Savova, et al.

Pretraining of models with a broad representation of biomedical terminology (PubMedBERT) on MIMIC-III corpus along with or without a novel entity-centric masking strategy.

Published: March 17, 2022. Version: 1.0.1

Database Credentialed Access

MIMIC-IV-Ext-22MCTS: A 22 Millions-Event Temporal Clinical Time-Series Dataset with Relative Timestamp

Jing Wang, Xing Niu, Tong Zhang, et al.

It is a time series clinical events dataset with concrete temporal information. The dataset consists of 22,588,586 clinical events and related timestamps from 267,284 discharge summaries of the MIMIC-IV-Note.

mimic clinical event annotation time series temporal annotation

Published: Sept. 29, 2025. Version: 1.0.0

Database Credentialed Access

RadNLI: A natural language inference dataset for the radiology domain

Yasuhide Miura, Yuhao Zhang, Emily Tsai, et al.

A radiology NLI dataset introduced in the paper: Improving Factual Completeness and Consistency of Image-to-text Radiology Report Generation

Published: June 29, 2021. Version: 1.0.0

Database Credentialed Access

National Institutes of Health Stroke Scale (NIHSS) Annotations for the MIMIC-III Database

Jiayang Wang, Xiaoshuo Huang, Lin Yang, et al.

A dataset of annotated NIHSS scale items and corresponding scores from stroke patients discharge summaries in MIMIC-III.

Published: Jan. 25, 2021. Version: 1.0.0

Database Restricted Access

HYAMD High-Resolution Fundus Image Dataset for age related macular degeneration (AMD) Diagnosis

Meishar Meisel, Benjamin Alfred Cohen, Meital Baskin, et al.

The HYAMD dataset comprises 1,560 high-resolution fundus images from 325 patients, aimed at validating machine learning models for age-related macular degeneration (AMD) diagnosis.

Published: Sept. 9, 2025. Version: 1.0.0

Database Open Access

VitalDB Arrhythmia Database: An Anesthesiologist-Validated Large-Scale Intraoperative Arrhythmia Dataset with Beat and Rhythm Labels

Dain Eun, Kayoung Shim, Hyunsoo Lee, et al.

We present a comprehensive intraoperative arrhythmia dataset with 734,528 seconds of ECG recordings from 482 patients, featuring over 660,000 beats annotated and validated by five anesthesiologists.

ppg vitaldb ecg arterial waveform intraoperative dataset

Published: Feb. 26, 2026. Version: 1.0.0

Model Credentialed Access

Characterization of Stigmatizing Language in Medical Records

Keith Harrigian, Ayah Zirikly, Brant Chee, et al.

A suite of classifiers for detecting three types of stigmatizing language in electronic medical records. Trained on MIMIC-IV discharge notes.

clinical natural language processing domain transfer bias stigmatizing language mimic large language models

Published: Nov. 6, 2023. Version: 1.0.0

Model Credentialed Access

Characterization of Stigmatizing Language in Medical Records

Keith Harrigian, Ayah Zirikly, Brant Chee, et al.

A suite of classifiers for detecting three types of stigmatizing language in electronic medical records. Trained on MIMIC-IV discharge notes.

clinical natural language processing domain transfer bias stigmatizing language mimic large language models

Published: Nov. 6, 2023. Version: 1.0.0

Database Credentialed Access

MedNLI - A Natural Language Inference Dataset For The Clinical Domain

Chaitanya Shivade

This is a resource for training machine learning models for language inference in the medical domain.

natural language inference recognizing textual entailment

Published: Oct. 1, 2019. Version: 1.0.0

Challenge Credentialed Access

BioNLP Workshop 2023 Shared Task 1A: Problem List Summarization

Yanjun Gao, Dmitriy Dligach, Timothy Miller, et al.

This is the data storage for BioNLP Workshop Shared Task 1A: Problem List Summarization.

bionlp clinical natural language processing electronic health record summarization

Published: Nov. 12, 2023. Version: 2.0.0